SPL3 (Vitis vinifera)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 VIT_10s0003g00050 T323152_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.907 0.787
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.907 0.787
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.907 0.787
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.896 0.733
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.896 0.733
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.896 0.733
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.892 0.667
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.892 0.733
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.889 0.760
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_10s0003g00050.t01 SBP 56 130

Links

Other SBP family TFs
Other Vitis vinifera TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.980
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.965
30190.m011329 Ricinus communis 30190.m011329 I 0.965
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.964
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.964
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.962
Ca_00320 Cicer arietinum Ca_00320 I 0.960
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.958
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.956
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.956
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.956
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.956
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.955
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.955
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.954
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.952
Bra021880 Brassica rapa Bra021880 I 0.951
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.949
Si032170m.g Setaria italica Si032170m.g I 0.949
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.946
Bra038324 Brassica rapa Bra038324 I 0.943
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.943
Bo2g062840 Brassica oleracea Bo2g062840 I 0.942
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.942
SPL6 Arabidopsis thaliana AT1G69170 I 0.941
mgf011616m Mimulus guttatus mgf011616m I 0.940
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.940
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.940
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.940
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.939
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.938
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.938
Pm030597 Prunus mume Pm030597 I 0.938
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.937
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.937
Cla021411 Citrullus lanatus Cla021411 I 0.936
MDP0000171877 Malus domestica MDP0000171877 I 0.935
MDP0000246046 Malus domestica MDP0000246046 I 0.935
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.934
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.934
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.932
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.932
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.931
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.930
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.930
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.929
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.928
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.928
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.928
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.928
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.928
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.926
TCM_017247 Theobroma cacao TCM_017247 N 0.926
Pm014154 Prunus mume Pm014154 I 0.926
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.926
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.926
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.925
TCM_008150 Theobroma cacao TCM_008150 I 0.925
PK26639.1 Cannabis sativa PK26639.1 I 0.925
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.923
29983.m003158 Ricinus communis 29983.m003158 I 0.923
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.922
MDP0000156994 Malus domestica MDP0000156994 I 0.922
MDP0000861601 Malus domestica MDP0000861601 I 0.922
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.921
F775_02791 Aegilops tauschii F775_02791 I 0.921
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.921
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.921
OB04G27960 Oryza brachyantha OB04G27960 I 0.921
OBART07G15570 Oryza barthii OBART07G15570 I 0.921
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.921
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.921
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.921
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.921
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.921
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.921
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.920
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.920
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.920
OBART04G20940 Oryza barthii OBART04G20940 I 0.920
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.920
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.920
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.920
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.920
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.920
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.920
SPL7 Oryza sativa OS04G0551500 I 0.920
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.918
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.918
Si010262m.g Setaria italica Si010262m.g I 0.918
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.918
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.917
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.916
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.916
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.916
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.916
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.916
OB04G34990 Oryza brachyantha OB04G34990 I 0.916
OBART04G27990 Oryza barthii OBART04G27990 I 0.916
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.916
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.916
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.916
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.916
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.916
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.916
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.916
SPL8 Oryza sativa OS04G0656500 I 0.916
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.916
Si022315m.g Setaria italica Si022315m.g I 0.916
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.916
Ca_10879 Cicer arietinum Ca_10879 I 0.916
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.916
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.916
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.914
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.914
MDP0000589558 Malus domestica MDP0000589558 I 0.914
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.913
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.913
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.913
Ca_24655 Cicer arietinum Ca_24655 I 0.913
Pm010075 Prunus mume Pm010075 I 0.913
30174.m008805 Ricinus communis 30174.m008805 I 0.913
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.913
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.913
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.913
TCM_029832 Theobroma cacao TCM_029832 I 0.912
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.912
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.911
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.910
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.910
Cla009788 Citrullus lanatus Cla009788 I 0.910
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.910
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.910
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.910
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.910
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.909
TCM_005620 Theobroma cacao TCM_005620 I 0.909
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.909
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.909
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.908
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.908
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.908
SPL3 Arabidopsis thaliana AT2G33810 D 0.907
Bo3g027460 Brassica oleracea Bo3g027460 I 0.907
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.907
MDP0000119458 Malus domestica MDP0000119458 I 0.907
MDP0000193702 Malus domestica MDP0000193702 I 0.907
Ca_24733 Cicer arietinum Ca_24733 I 0.906
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.906
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.906
Bo4g042390 Brassica oleracea Bo4g042390 I 0.904
Bra005470 Brassica rapa Bra005470 I 0.904
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.904
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.904
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.903
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.903
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.903
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.902
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.902
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.901
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.900
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.900
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.900
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.900
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.899
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.898
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.898
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.898
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.898
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.897
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.897
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.897
Pm011381 Prunus mume Pm011381 I 0.897
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.897
MDP0000158607 Malus domestica MDP0000158607 I 0.897
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.897
SPL5 Arabidopsis thaliana AT3G15270 D 0.896
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.896
mgf016414m Mimulus guttatus mgf016414m I 0.896
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.895
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.895
PK14243.1 Cannabis sativa PK14243.1 N 0.895
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.894
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.893
OB08G27190 Oryza brachyantha OB08G27190 I 0.893
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.893
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.893
Cla023735 Citrullus lanatus Cla023735 I 0.893
29889.m003388 Ricinus communis 29889.m003388 I 0.893
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.893
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.893
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.893
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.893
Bo4g005730 Brassica oleracea Bo4g005730 I 0.892
Bra041037 Brassica rapa Bra041037 I 0.892
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.892
Ca_03548 Cicer arietinum Ca_03548 I 0.892
28211.m000132 Ricinus communis 28211.m000132 I 0.892
30076.m004574 Ricinus communis 30076.m004574 I 0.892
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.892
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.892
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.892
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.892
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.892
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.892
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.892
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.892
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.892
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.892
PK06791.1 Cannabis sativa PK06791.1 D 0.892
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.891
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.891
Ca_16243 Cicer arietinum Ca_16243 I 0.891
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.891
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.890
LPERR07G13070 Leersia perrieri LPERR07G13070 N 0.890
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.890
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.890
TCM_004922 Theobroma cacao TCM_004922 I 0.890
TCM_021482 Theobroma cacao TCM_021482 I 0.890
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.890
Cla017596 Citrullus lanatus Cla017596 I 0.890
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.890
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.890
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.890
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.890
MDP0000180408 Malus domestica MDP0000180408 I 0.890
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.890
SPL4 Arabidopsis thaliana AT1G53160 D 0.889
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.889
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.889
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.889
Bra004363 Brassica rapa Bra004363 N 0.888
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.888
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.888
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.888
Bo6g108620 Brassica oleracea Bo6g108620 N 0.887
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.887
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.887
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.887
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.887
MDP0000919694 Malus domestica MDP0000919694 I 0.887
TCM_011483 Theobroma cacao TCM_011483 I 0.886
mgf009459m Mimulus guttatus mgf009459m I 0.886
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.886
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.886