Cla009788 (Citrullus lanatus)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cla009788 T323187_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.921 0.733
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.921 0.733
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.921 0.733
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.909 0.747
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.897 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009788 SBP 55 129

Links

Other SBP family TFs
Other Citrullus lanatus TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.978
PK26639.1 Cannabis sativa PK26639.1 I 0.976
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.969
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.965
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.965
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.964
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.964
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.963
30174.m008805 Ricinus communis 30174.m008805 I 0.963
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.963
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.963
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.962
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.962
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.961
TCM_005620 Theobroma cacao TCM_005620 I 0.961
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.961
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.961
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.960
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.960
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.959
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.958
Ca_10879 Cicer arietinum Ca_10879 I 0.958
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.957
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.957
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.957
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.957
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.957
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.956
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.955
MDP0000158607 Malus domestica MDP0000158607 I 0.955
30190.m011329 Ricinus communis 30190.m011329 I 0.954
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.954
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.954
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.954
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.953
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.953
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.953
Ca_16243 Cicer arietinum Ca_16243 I 0.953
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.953
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.953
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.951
MDP0000156994 Malus domestica MDP0000156994 I 0.949
MDP0000861601 Malus domestica MDP0000861601 I 0.949
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.948
Pm011381 Prunus mume Pm011381 I 0.948
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.947
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.947
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.946
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.946
Si010262m.g Setaria italica Si010262m.g I 0.946
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.945
Pm014154 Prunus mume Pm014154 I 0.945
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.945
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.945
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.944
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.944
Cla021411 Citrullus lanatus Cla021411 I 0.944
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.944
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.944
Cla023735 Citrullus lanatus Cla023735 I 0.943
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.943
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.942
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.940
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.940
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.940
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.940
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.939
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.939
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.939
29983.m003158 Ricinus communis 29983.m003158 I 0.937
F775_02791 Aegilops tauschii F775_02791 I 0.936
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.936
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.936
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.936
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.936
Pm010075 Prunus mume Pm010075 I 0.936
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.936
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.936
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.936
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.935
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.935
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.935
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.934
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.934
OB04G27960 Oryza brachyantha OB04G27960 I 0.933
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.933
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.933
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.932
OBART04G20940 Oryza barthii OBART04G20940 I 0.932
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.932
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.932
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.932
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.932
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.932
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.932
SPL7 Oryza sativa OS04G0551500 I 0.932
Bra021880 Brassica rapa Bra021880 I 0.930
Bo4g042390 Brassica oleracea Bo4g042390 I 0.929
Bra005470 Brassica rapa Bra005470 I 0.929
mgf011616m Mimulus guttatus mgf011616m I 0.928
mgf025134m Mimulus guttatus mgf025134m I 0.928
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.928
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.927
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.927
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.926
TCM_029832 Theobroma cacao TCM_029832 I 0.926
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.926
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.925
Ca_00320 Cicer arietinum Ca_00320 I 0.925
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.924
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.924
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.924
MDP0000589558 Malus domestica MDP0000589558 I 0.924
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.923
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.923
Si032170m.g Setaria italica Si032170m.g I 0.923
Ca_24655 Cicer arietinum Ca_24655 I 0.923
Cla020006 Citrullus lanatus Cla020006 I 0.923
Pm017778 Prunus mume Pm017778 I 0.923
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.923
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.923
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.923
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.922
SPL3 Arabidopsis thaliana AT2G33810 D 0.921
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.921
mgf016414m Mimulus guttatus mgf016414m I 0.921
Bo3g027460 Brassica oleracea Bo3g027460 I 0.919
mgf017351m Mimulus guttatus mgf017351m I 0.919
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.918
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.916
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.916
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.915
Bra022954 Brassica rapa Bra022954 I 0.914
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.914
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.914
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.913
VIT_04s0210g00170 Vitis vinifera VIT_04s0210g00170 N 0.912
MDP0000262141 Malus domestica MDP0000262141 I 0.912
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.910
MDP0000865739 Malus domestica MDP0000865739 I 0.910
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.909
PK22320.1 Cannabis sativa PK22320.1 D 0.909
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.907
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.905
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.905
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I 0.905
Carubv10010422m.g Capsella rubella Carubv10010422m.g I 0.905
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.905
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.905
mgf001295m Mimulus guttatus mgf001295m I 0.903
Bra038324 Brassica rapa Bra038324 I 0.901
28211.m000132 Ricinus communis 28211.m000132 I 0.901
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.900
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.900
PK17790.1 Cannabis sativa PK17790.1 I 0.900
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.899
Bo2g062840 Brassica oleracea Bo2g062840 I 0.899
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.899
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.899
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.898
Cla002263 Citrullus lanatus Cla002263 I 0.898
Pm017777 Prunus mume Pm017777 I 0.898
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.897
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.897
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.897
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.897
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.896
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.896
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.896
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.895
PK03565.1 Cannabis sativa PK03565.1 I 0.895
Lus10009984.g Linum usitatissimum Lus10009984.g I 0.894
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.893
TCM_031595 Theobroma cacao TCM_031595 I 0.893
Pm030597 Prunus mume Pm030597 I 0.893
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.893
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.892
TCM_014330 Theobroma cacao TCM_014330 I 0.892
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.892
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.891
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.891
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.891
Cla019331 Citrullus lanatus Cla019331 I 0.891
30138.m003942 Ricinus communis 30138.m003942 I 0.891
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.891
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.891
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.891
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.891
MDP0000146640 Malus domestica MDP0000146640 I 0.891
MDP0000778465 Malus domestica MDP0000778465 I 0.891
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.891
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.890
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.890
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.890
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.890
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.890
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.890
OBART07G15570 Oryza barthii OBART07G15570 I 0.890
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.890
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.890
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.890
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.890
Ca_19449 Cicer arietinum Ca_19449 I 0.890
30174.m009082 Ricinus communis 30174.m009082 I 0.890
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.890
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.890
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.889
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.888
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.888
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.888
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.888
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.888
SPL6 Arabidopsis thaliana AT1G69170 I 0.887
TCM_008150 Theobroma cacao TCM_008150 I 0.887
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.886
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.886
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.886
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.886
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.886
Si034095m.g Setaria italica Si034095m.g I 0.886
mgf000195m Mimulus guttatus mgf000195m I 0.886
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.886
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.886
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.886
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.886