Carubv10012577m.g (Capsella rubella)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Carubv10012577m.g T323416_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.982 1.000
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.982 1.000
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.982 1.000
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.980 0.933
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.977 0.960
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.974 0.840
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.970 0.920
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.970 0.827
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.962 0.720
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.959 0.827
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.959 0.827
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.959 0.827
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.957 0.720
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.957 0.720
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.957 0.720
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.951 0.707
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.947 0.733
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.931 0.693
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.931 0.693
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.931 0.693
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.907 0.653
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012577m SBP 133 207

Links

Other SBP family TFs
Other Capsella rubella TFs

509 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03185 Aegilops tauschii F775_03185 N
F775_23458 Aegilops tauschii F775_23458 N
F775_25020 Aegilops tauschii F775_25020 N
F775_43492 Aegilops tauschii F775_43492 N
AMTR_s00024p00250370 Amborella trichopoda AMTR_s00024p00250370 N
Aquca_041_00164 Aquilegia coerulea Aquca_041_00164 N
RSL1 Arabidopsis lyrata fgenesh2_kg.7__3192__AT5G37800.1 N
RHD6 Arabidopsis lyrata scaffold_201372.1 N
BHLH83 Arabidopsis thaliana AT1G66470 N
BHLH86 Arabidopsis thaliana AT5G37800 N
Bostr.26959s0271 Boechera stricta Bostr.26959s0271 N
Bostr.9638s0100 Boechera stricta Bostr.9638s0100 N
BRADI2G01000 Brachypodium distachyon BRADI2G01000 N
BRADI3G53060 Brachypodium distachyon BRADI3G53060 N
Bo00835s050 Brassica oleracea Bo00835s050 N
Bo6g101000 Brassica oleracea Bo6g101000 N
Bra019708 Brassica rapa Bra019708 N
Cagra.2629s0001 Capsella grandiflora Cagra.2629s0001 N
Cagra.8123s0001 Capsella grandiflora Cagra.8123s0001 N
Carubv10007389m.g Capsella rubella Carubv10007389m.g N
Carubv10021322m.g Capsella rubella Carubv10021322m.g N
evm.TU.contig_27490 Carica papaya evm.TU.contig_27490 N
Ca_16136 Cicer arietinum Ca_16136 N
Cla020067 Citrullus lanatus Cla020067 N
Ciclev10013420m.g Citrus clementina Ciclev10013420m.g N
orange1.1g038918m.g Citrus sinensis orange1.1g038918m.g N
Cucsa.006340 Cucumis sativus Cucsa.006340 N
Eucgr.F02831 Eucalyptus grandis Eucgr.F02831 N
Thhalv10018927m.g Eutrema salsugineum Thhalv10018927m.g N
Thhalv10028239m.g Eutrema salsugineum Thhalv10028239m.g N
gene17937-v1.0-hybrid Fragaria vesca gene17937-v1.0-hybrid N
GLYMA02G41370 Glycine max GLYMA02G41370 N
GLYMA11G33840 Glycine max GLYMA11G33840 N
GLYMA14G07590 Glycine max GLYMA14G07590 N
GLYMA18G04420 Glycine max GLYMA18G04420 N
Gorai.001G086800 Gossypium raimondii Gorai.001G086800 N
Gorai.004G064400 Gossypium raimondii Gorai.004G064400 N
LPERR01G00690 Leersia perrieri LPERR01G00690 N
LPERR02G24230 Leersia perrieri LPERR02G24230 N
Lus10017634.g Linum usitatissimum Lus10017634.g N
Lus10033592.g Linum usitatissimum Lus10033592.g N
MDP0000435722 Malus domestica MDP0000435722 N
cassava10199.m1 Manihot esculenta cassava10199.m1 N
MTR_5g079500 Medicago truncatula MTR_5g079500 N
mgf025678m Mimulus guttatus mgf025678m N
GSMUA_Achr10G20230_001 Musa acuminata GSMUA_Achr10G20230_001 N
GSMUA_Achr2G22860_001 Musa acuminata GSMUA_Achr2G22860_001 N
GSMUA_Achr6G09370_001 Musa acuminata GSMUA_Achr6G09370_001 N
OBART01G00850 Oryza barthii OBART01G00850 N
OBART02G29800 Oryza barthii OBART02G29800 N
OB01G10850 Oryza brachyantha OB01G10850 N
OB02G36990 Oryza brachyantha OB02G36990 N
ORGLA01G0007400 Oryza glaberrima ORGLA01G0007400 N
ORGLA02G0253300 Oryza glaberrima ORGLA02G0253300 N
OGLUM01G00830 Oryza glumaepatula OGLUM01G00830 N
OGLUM02G30450 Oryza glumaepatula OGLUM02G30450 N
BGIOSGA002533 Oryza indica BGIOSGA002533 N
BGIOSGA008903 Oryza indica BGIOSGA008903 N
OLONG_010619 Oryza longistaminata OLONG_010619 N
OMERI01G00290 Oryza meridionalis OMERI01G00290 N
OMERI02G28660 Oryza meridionalis OMERI02G28660 N
ONIVA01G00780 Oryza nivara ONIVA01G00780 N
ONIVA02G32560 Oryza nivara ONIVA02G32560 N
OPUNC01G00700 Oryza punctata OPUNC01G00700 N
OPUNC02G27370 Oryza punctata OPUNC02G27370 N
ORUFI01G00830 Oryza rufipogon ORUFI01G00830 N
ORUFI02G31420 Oryza rufipogon ORUFI02G31420 N
OS01G0111500 Oryza sativa OS01G0111500 N
OS02G0710300 Oryza sativa OS02G0710300 N
Pavir.Aa00611 Panicum virgatum Pavir.Aa00611 N
Pavir.Eb00817 Panicum virgatum Pavir.Eb00817 N
Pavir.J04215 Panicum virgatum Pavir.J04215 N
Pavir.J20533 Panicum virgatum Pavir.J20533 N
estExt_fgenesh1_pg.C_1470079 Physcomitrella patens estExt_fgenesh1_pg.C_1470079 N
estExt_fgenesh1_pg.C_840011 Physcomitrella patens estExt_fgenesh1_pg.C_840011 N
POPTR_0004s08770 Populus trichocarpa POPTR_0004s08770 N
POPTR_0005s14360 Populus trichocarpa POPTR_0005s14360 N
Pm014359 Prunus mume Pm014359 N
PRUPE_ppa025775mg Prunus persica PRUPE_ppa025775mg N
28609.m000209 Ricinus communis 28609.m000209 N
SapurV1A.0102s0280 Salix purpurea SapurV1A.0102s0280 N
SapurV1A.0230s0340 Salix purpurea SapurV1A.0230s0340 N
SELMODRAFT_409967 Selaginella moellendorffii SELMODRAFT_409967 N
SELMODRAFT_413232 Selaginella moellendorffii SELMODRAFT_413232 N
SELMODRAFT_414414 Selaginella moellendorffii SELMODRAFT_414414 N
SELMODRAFT_426794 Selaginella moellendorffii SELMODRAFT_426794 N
Si004720m.g Setaria italica Si004720m.g N
Si019575m.g Setaria italica Si019575m.g N
Solyc02g091440.1 Solanum lycopersicum Solyc02g091440.1 N
PGSC0003DMG400030650 Solanum tuberosum PGSC0003DMG400030650 N
Sb03g008290 Sorghum bicolor Sb03g008290 N
Sb04g030230 Sorghum bicolor Sb04g030230 N
TCM_019210 Theobroma cacao TCM_019210 N
Traes_3AS_0D78930B4 Triticum aestivum Traes_3AS_0D78930B4 N
TRAES3BF060500180CFD_g Triticum aestivum TRAES3BF060500180CFD_g N
Traes_6BL_9B25E6A10 Triticum aestivum Traes_6BL_9B25E6A10 N
Traes_6BL_A964BE52B Triticum aestivum Traes_6BL_A964BE52B N
TRIUR3_11692 Triticum urartu TRIUR3_11692 N
TRIUR3_27166 Triticum urartu TRIUR3_27166 N
VIT_14s0006g01470 Vitis vinifera VIT_14s0006g01470 N
AC216731.3_FG001 Zea mays AC216731.3_FG001 N
GRMZM2G066057 Zea mays GRMZM2G066057 N