CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_27.40
(
Carica papaya
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
evm.TU.supercontig_27.40
T323470_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL3
M07255_2.00
Arabidopsis thaliana
NGTACGGA
TCCGTACN
Dap-seq
OMalley et al.(2016)
SPL3_col_a
0.914
0.720
SPL3
M07256_2.00
Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN
Dap-seq
OMalley et al.(2016)
SPL3_colamp_a
0.914
0.720
SPL3
M02715_2.00
Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH
SELEX
Mathelier et al.(2014)
MA0577.1
0.914
0.720
PK22320.1
M02483_2.00
Cannabis sativa
NNGTACGGNN
NNCCGTACNN
PBM
Weirauch et al.(2014)
pTH9723
0.898
0.747
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_27.40
SBP
61
135
CQADHCTVDMGDAKRYYKRHKVCEYHAKASFVLVNGVQQRFCQQCSRFHEVSEFDDTKRSCRRRLAGHNERRRKS
Links
Other
SBP
family TFs
Other
Carica papaya
TFs
172 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29983.m003158
Ricinus communis
29983.m003158
I
0.955
30174.m008805
Ricinus communis
30174.m008805
I
0.952
30190.m011329
Ricinus communis
30190.m011329
I
0.973
AMTR_s00106p00142470
Amborella trichopoda
AMTR_s00106p00142470
I
0.919
Aquca_033_00055
Aquilegia coerulea
Aquca_033_00055
I
0.929
Aquca_035_00165
Aquilegia coerulea
Aquca_035_00165
I
0.949
SPL3
Arabidopsis thaliana
AT2G33810
D
0.914
BGIOSGA016888
Oryza indica
BGIOSGA016888
I
0.923
BGIOSGA024253
Oryza indica
BGIOSGA024253
I
0.910
Bo2g062840
Brassica oleracea
Bo2g062840
I
0.886
Bo3g027460
Brassica oleracea
Bo3g027460
I
0.914
Bo4g042390
Brassica oleracea
Bo4g042390
I
0.910
Bostr.23794s0714
Boechera stricta
Bostr.23794s0714
I
0.930
Bra005470
Brassica rapa
Bra005470
I
0.910
Bra021880
Brassica rapa
Bra021880
I
0.925
Bra022954
Brassica rapa
Bra022954
I
0.907
Bra038324
Brassica rapa
Bra038324
I
0.889
BRADI1G26720
Brachypodium distachyon
BRADI1G26720
I
0.942
Cagra.1195s0023
Capsella grandiflora
Cagra.1195s0023
I
0.915
Cagra.1472s0017
Capsella grandiflora
Cagra.1472s0017
I
0.901
Carubv10010422m.g
Capsella rubella
Carubv10010422m.g
I
0.901
Carubv10024311m.g
Capsella rubella
Carubv10024311m.g
I
0.915
cassava17741.valid.m1
Manihot esculenta
cassava17741.valid.m1
I
0.947
cassava31252.valid.m1
Manihot esculenta
cassava31252.valid.m1
I
0.890
cassava37839.valid.m1
Manihot esculenta
cassava37839.valid.m1
I
0.886
cassava46941.m1
Manihot esculenta
cassava46941.m1
I
0.930
Ca_00320
Cicer arietinum
Ca_00320
I
0.950
Ca_10879
Cicer arietinum
Ca_10879
I
0.954
Ca_16243
Cicer arietinum
Ca_16243
I
0.930
Ca_24655
Cicer arietinum
Ca_24655
I
0.914
chr3.CM0160.520.nc
Lotus japonicus
chr3.CM0160.520.nc
I
0.975
chr3.CM0282.980.nc
Lotus japonicus
chr3.CM0282.980.nc
I
0.931
chr6.CM0114.270.nc
Lotus japonicus
chr6.CM0114.270.nc
I
0.952
Ciclev10016841m.g
Citrus clementina
Ciclev10016841m.g
I
0.890
Ciclev10017104m.g
Citrus clementina
Ciclev10017104m.g
I
0.937
Ciclev10019546m.g
Citrus clementina
Ciclev10019546m.g
I
0.888
Ciclev10020532m.g
Citrus clementina
Ciclev10020532m.g
I
0.943
Ciclev10031270m.g
Citrus clementina
Ciclev10031270m.g
I
0.909
Cla002263
Citrullus lanatus
Cla002263
I
0.888
Cla009788
Citrullus lanatus
Cla009788
I
0.969
Cla020006
Citrullus lanatus
Cla020006
I
0.888
Cla021411
Citrullus lanatus
Cla021411
I
0.927
Cla023735
Citrullus lanatus
Cla023735
I
0.936
Cucsa.046310
Cucumis sativus
Cucsa.046310
N
0.902
Cucsa.196000
Cucumis sativus
Cucsa.196000
I
0.936
Cucsa.259800
Cucumis sativus
Cucsa.259800
I
0.923
Cucsa.272530
Cucumis sativus
Cucsa.272530
I
0.903
Eucgr.D02505
Eucalyptus grandis
Eucgr.D02505
I
0.945
Eucgr.E03260
Eucalyptus grandis
Eucgr.E03260
I
0.935
Eucgr.F03303
Eucalyptus grandis
Eucgr.F03303
I
0.904
Eucgr.K01046
Eucalyptus grandis
Eucgr.K01046
I
0.900
evm.TU.supercontig_149.2
Carica papaya
evm.TU.supercontig_149.2
I
0.950
evm.TU.supercontig_80.88
Carica papaya
evm.TU.supercontig_80.88
I
0.895
F775_00761
Aegilops tauschii
F775_00761
I
0.888
F775_02791
Aegilops tauschii
F775_02791
I
0.924
SPL3
Arabidopsis lyrata
fgenesh2_kg.4__1394__AT2G33810.1
I
0.916
gene00196-v1.0-hybrid
Fragaria vesca
gene00196-v1.0-hybrid
I
0.950
gene17738-v1.0-hybrid
Fragaria vesca
gene17738-v1.0-hybrid
I
0.945
gene29726-v1.0-hybrid
Fragaria vesca
gene29726-v1.0-hybrid
I
0.927
GLYMA01G08056
Glycine max
GLYMA01G08056
I
0.905
GLYMA01G15134
Glycine max
GLYMA01G15134
I
0.901
GLYMA02G13371
Glycine max
GLYMA02G13371
I
0.905
GLYMA03G27195
Glycine max
GLYMA03G27195
I
0.920
GLYMA06G36140
Glycine max
GLYMA06G36140
I
0.931
GLYMA07G14641
Glycine max
GLYMA07G14641
I
0.927
GLYMA07G31880
Glycine max
GLYMA07G31880
N
0.915
GLYMA11G08905
Glycine max
GLYMA11G08905
N
0.886
GLYMA11G16556
Glycine max
GLYMA11G16556
I
0.949
GLYMA12G27330
Glycine max
GLYMA12G27330
I
0.930
GLYMA13G24590
Glycine max
GLYMA13G24590
N
0.914
GLYMA13G31090
Glycine max
GLYMA13G31090
I
0.963
GLYMA13G37130
Glycine max
GLYMA13G37130
N
0.895
GLYMA15G08270
Glycine max
GLYMA15G08270
I
0.968
Gorai.004G047200
Gossypium raimondii
Gorai.004G047200
I
0.921
Gorai.007G087900
Gossypium raimondii
Gorai.007G087900
I
0.950
Gorai.007G116100
Gossypium raimondii
Gorai.007G116100
I
0.921
Gorai.008G107300
Gossypium raimondii
Gorai.008G107300
I
0.946
Gorai.011G029400
Gossypium raimondii
Gorai.011G029400
I
0.914
GRMZM2G148467
Zea mays
GRMZM2G148467
I
0.936
GSMUA_Achr1G08440_001
Musa acuminata
GSMUA_Achr1G08440_001
I
0.943
GSMUA_Achr2G03070_001
Musa acuminata
GSMUA_Achr2G03070_001
I
0.923
GSMUA_Achr4G23650_001
Musa acuminata
GSMUA_Achr4G23650_001
I
0.942
GSMUA_Achr4G26940_001
Musa acuminata
GSMUA_Achr4G26940_001
I
0.947
GSMUA_Achr5G13440_001
Musa acuminata
GSMUA_Achr5G13440_001
I
0.943
LPERR04G17030
Leersia perrieri
LPERR04G17030
I
0.924
Lus10005548.g
Linum usitatissimum
Lus10005548.g
I
0.927
Lus10013999.g
Linum usitatissimum
Lus10013999.g
I
0.947
Lus10015421.g
Linum usitatissimum
Lus10015421.g
I
0.947
Lus10018610.g
Linum usitatissimum
Lus10018610.g
I
0.967
Lus10039846.g
Linum usitatissimum
Lus10039846.g
I
0.967
MDP0000156994
Malus domestica
MDP0000156994
I
0.929
MDP0000158607
Malus domestica
MDP0000158607
I
0.934
MDP0000262141
Malus domestica
MDP0000262141
I
0.900
MDP0000589558
Malus domestica
MDP0000589558
I
0.911
MDP0000861601
Malus domestica
MDP0000861601
I
0.929
MDP0000865739
Malus domestica
MDP0000865739
I
0.910
mgf000195m
Mimulus guttatus
mgf000195m
I
0.892
mgf011616m
Mimulus guttatus
mgf011616m
I
0.937
mgf016414m
Mimulus guttatus
mgf016414m
I
0.909
mgf017351m
Mimulus guttatus
mgf017351m
I
0.891
mgf025134m
Mimulus guttatus
mgf025134m
I
0.923
MLOC_13032
Hordeum vulgare
MLOC_13032
I
0.934
MLOC_69667
Hordeum vulgare
MLOC_69667
I
0.924
MTR_2g014200
Medicago truncatula
MTR_2g014200
I
0.957
MTR_4g088555
Medicago truncatula
MTR_4g088555
I
0.963
MTR_5g046670
Medicago truncatula
MTR_5g046670
I
0.937
MTR_7g444860
Medicago truncatula
MTR_7g444860
I
0.952
MTR_8g463140
Medicago truncatula
MTR_8g463140
I
0.930
OB04G27960
Oryza brachyantha
OB04G27960
I
0.924
OBART04G20940
Oryza barthii
OBART04G20940
I
0.923
OBART07G15570
Oryza barthii
OBART07G15570
I
0.910
OGLUM04G20870
Oryza glumaepatula
OGLUM04G20870
I
0.923
OGLUM07G15250
Oryza glumaepatula
OGLUM07G15250
I
0.910
OMERI04G17360
Oryza meridionalis
OMERI04G17360
I
0.923
OMERI07G12270
Oryza meridionalis
OMERI07G12270
I
0.910
ONIVA04G19190
Oryza nivara
ONIVA04G19190
I
0.923
ONIVA07G14170
Oryza nivara
ONIVA07G14170
I
0.910
OPUNC04G18620
Oryza punctata
OPUNC04G18620
I
0.923
orange1.1g008680m.g
Citrus sinensis
orange1.1g008680m.g
I
0.888
orange1.1g009653m.g
Citrus sinensis
orange1.1g009653m.g
I
0.909
orange1.1g017256m.g
Citrus sinensis
orange1.1g017256m.g
I
0.943
orange1.1g029650m.g
Citrus sinensis
orange1.1g029650m.g
I
0.886
orange1.1g032310m.g
Citrus sinensis
orange1.1g032310m.g
I
0.938
ORGLA04G0180000
Oryza glaberrima
ORGLA04G0180000
I
0.923
ORUFI04G22540
Oryza rufipogon
ORUFI04G22540
I
0.923
ORUFI07G16070
Oryza rufipogon
ORUFI07G16070
I
0.910
SPL7
Oryza sativa
OS04G0551500
I
0.923
Pavir.Ab00520
Panicum virgatum
Pavir.Ab00520
I
0.899
Pavir.Ga01083
Panicum virgatum
Pavir.Ga01083
I
0.944
Pavir.Gb01121
Panicum virgatum
Pavir.Gb01121
I
0.943
PGSC0003DMG400022824
Solanum tuberosum
PGSC0003DMG400022824
I
0.953
PGSC0003DMG400032817
Solanum tuberosum
PGSC0003DMG400032817
I
0.959
PGSC0003DMG401029709
Solanum tuberosum
PGSC0003DMG401029709
I
0.888
PK22320.1
Cannabis sativa
PK22320.1
D
0.898
PK26639.1
Cannabis sativa
PK26639.1
I
0.969
Pm010075
Prunus mume
Pm010075
I
0.933
Pm011381
Prunus mume
Pm011381
I
0.934
Pm014154
Prunus mume
Pm014154
I
0.943
Pm017778
Prunus mume
Pm017778
I
0.911
POPTR_0002s14330
Populus trichocarpa
POPTR_0002s14330
I
0.950
POPTR_0004s04630
Populus trichocarpa
POPTR_0004s04630
I
0.965
POPTR_0007s01030
Populus trichocarpa
POPTR_0007s01030
I
0.919
POPTR_0014s05690
Populus trichocarpa
POPTR_0014s05690
I
0.952
PRUPE_ppa011968mg
Prunus persica
PRUPE_ppa011968mg
I
0.943
PRUPE_ppa012607mg
Prunus persica
PRUPE_ppa012607mg
I
0.933
PRUPE_ppa022739mg
Prunus persica
PRUPE_ppa022739mg
I
0.934
PRUPE_ppa024285mg
Prunus persica
PRUPE_ppa024285mg
I
0.911
SapurV1A.0012s0510
Salix purpurea
SapurV1A.0012s0510
I
0.977
SapurV1A.0032s0360
Salix purpurea
SapurV1A.0032s0360
I
0.957
SapurV1A.0033s0320
Salix purpurea
SapurV1A.0033s0320
I
0.952
SapurV1A.0118s0110
Salix purpurea
SapurV1A.0118s0110
I
0.894
SapurV1A.0382s0120
Salix purpurea
SapurV1A.0382s0120
I
0.912
SapurV1A.3749s0010
Salix purpurea
SapurV1A.3749s0010
I
0.894
Sb06g024630
Sorghum bicolor
Sb06g024630
I
0.898
Si010262m.g
Setaria italica
Si010262m.g
I
0.936
Si032170m.g
Setaria italica
Si032170m.g
I
0.931
Solyc02g077920.2
Solanum lycopersicum
Solyc02g077920.2
I
0.920
Solyc07g053810.2
Solanum lycopersicum
Solyc07g053810.2
I
0.950
Solyc10g009080.2
Solanum lycopersicum
Solyc10g009080.2
I
0.958
TCM_005620
Theobroma cacao
TCM_005620
I
0.949
TCM_008150
Theobroma cacao
TCM_008150
I
0.909
TCM_029832
Theobroma cacao
TCM_029832
I
0.925
Thhalv10017406m.g
Eutrema salsugineum
Thhalv10017406m.g
I
0.915
Traes_2AL_B45245746
Triticum aestivum
Traes_2AL_B45245746
I
0.924
Traes_2AS_C2A4AFE6F
Triticum aestivum
Traes_2AS_C2A4AFE6F
I
0.907
Traes_2BL_69E6AB6D1
Triticum aestivum
Traes_2BL_69E6AB6D1
I
0.924
Traes_2BS_186EA570A
Triticum aestivum
Traes_2BS_186EA570A
I
0.934
TRIUR3_23102
Triticum urartu
TRIUR3_23102
I
0.934
VIT_04s0210g00170
Vitis vinifera
VIT_04s0210g00170
N
0.914
SPL3
Vitis vinifera
VIT_10s0003g00050
I
0.952
VIT_12s0028g03350
Vitis vinifera
VIT_12s0028g03350
I
0.928
VIT_15s0021g02290
Vitis vinifera
VIT_15s0021g02290
I
0.949