gene01338-v1.0-hybrid (Fragaria vesca)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 gene01338-v1.0-hybrid T323477_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.909 0.747
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01338.1-v1.0-hybrid SBP 100 174

Links

Other SBP family TFs
Other Fragaria vesca TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa007202mg Prunus persica PRUPE_ppa007202mg I 0.979
Pm016138 Prunus mume Pm016138 I 0.979
MDP0000142582 Malus domestica MDP0000142582 N 0.975
30147.m014478 Ricinus communis 30147.m014478 I 0.965
MDP0000170630 Malus domestica MDP0000170630 N 0.957
VIT_14s0068g01780 Vitis vinifera VIT_14s0068g01780 N 0.955
PK14243.1 Cannabis sativa PK14243.1 N 0.954
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.953
Cla004156 Citrullus lanatus Cla004156 I 0.950
Cucsa.054050 Cucumis sativus Cucsa.054050 I 0.950
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.944
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.943
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.941
Ca_05711 Cicer arietinum Ca_05711 I 0.941
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.941
PK02140.1 Cannabis sativa PK02140.1 I 0.940
TCM_014668 Theobroma cacao TCM_014668 I 0.939
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.939
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.939
Si026656m.g Setaria italica Si026656m.g I 0.938
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.938
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.938
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.938
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.937
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.937
Cla002666 Citrullus lanatus Cla002666 I 0.937
Pm024528 Prunus mume Pm024528 I 0.937
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.937
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.936
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.935
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.935
VIT_17s0000g01260 Vitis vinifera VIT_17s0000g01260 I 0.935
29929.m004627 Ricinus communis 29929.m004627 I 0.935
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.935
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.935
GLYMA04G37391 Glycine max GLYMA04G37391 I 0.932
GLYMA06G17700 Glycine max GLYMA06G17700 I 0.932
MTR_3g099080 Medicago truncatula MTR_3g099080 I 0.932
Ca_01426 Cicer arietinum Ca_01426 I 0.932
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.932
Cucsa.157230 Cucumis sativus Cucsa.157230 I 0.931
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.931
SapurV1A.0168s0440 Salix purpurea SapurV1A.0168s0440 I 0.931
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.930
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.929
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.929
GLYMA16G05895 Glycine max GLYMA16G05895 I 0.928
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.928
GLYMA19G26390 Glycine max GLYMA19G26390 I 0.926
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.926
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.926
Cla019579 Citrullus lanatus Cla019579 I 0.926
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.923
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.923
TCM_008671 Theobroma cacao TCM_008671 I 0.922
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.922
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.922
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.921
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.921
cassava17811.valid.m1 Manihot esculenta cassava17811.valid.m1 I 0.920
MDP0000176265 Malus domestica MDP0000176265 I 0.920
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.919
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.919
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.917
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.915
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.915
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.915
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.914
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.914
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.913
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.913
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.913
Bo9g097630 Brassica oleracea Bo9g097630 I 0.911
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.911
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.911
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.910
Cla001541 Citrullus lanatus Cla001541 I 0.910
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.910
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.910
SPL13A Arabidopsis thaliana AT5G50570 I 0.909
SPL13A Arabidopsis thaliana AT5G50670 D 0.909
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.909
Bo3g024180 Brassica oleracea Bo3g024180 I 0.909
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.909
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.909
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.909
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.909
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.909
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.909
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.909
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.909
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.909
Ca_24733 Cicer arietinum Ca_24733 I 0.908
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.907
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I 0.907
Bra022766 Brassica rapa Bra022766 I 0.906
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.904
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.904
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.904
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.904
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.903
PK19500.1 Cannabis sativa PK19500.1 I 0.903
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.902
PK17790.1 Cannabis sativa PK17790.1 I 0.902
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.898
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.896
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.896
SPL16 Oryza sativa OS08G0531600 I 0.896
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.895
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.893
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.893
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.892
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.891
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.888
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.888
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.887
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.887
OS01G0922600 Oryza sativa OS01G0922600 I 0.886
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.886