Lus10009984.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10009984.g T323528_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.949 0.817
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.923 0.761
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.922 0.746
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.922 0.746
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.922 0.746
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.909 0.732
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.909 0.732
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.909 0.732
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.907 0.732
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.900 0.676
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.898 0.718
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10009984 SBP 164 234

Links

Other SBP family TFs
Other Linum usitatissimum TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.970
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.961
TCM_004922 Theobroma cacao TCM_004922 I 0.949
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.949
Ca_03548 Cicer arietinum Ca_03548 I 0.949
30076.m004574 Ricinus communis 30076.m004574 I 0.949
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.949
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.949
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.949
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.949
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.949
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.949
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.949
PK06791.1 Cannabis sativa PK06791.1 D 0.949
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.948
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.948
mgf009459m Mimulus guttatus mgf009459m I 0.947
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.947
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.946
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.946
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.946
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.946
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.946
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.946
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.944
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.944
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.944
30174.m008805 Ricinus communis 30174.m008805 I 0.944
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.944
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.944
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.943
Bo4g005730 Brassica oleracea Bo4g005730 I 0.942
Bra041037 Brassica rapa Bra041037 I 0.942
OB08G27190 Oryza brachyantha OB08G27190 I 0.942
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.942
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.942
29889.m003388 Ricinus communis 29889.m003388 I 0.942
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.942
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.942
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.941
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.941
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.941
TCM_005620 Theobroma cacao TCM_005620 I 0.941
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.941
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.941
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.940
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.940
TCM_021482 Theobroma cacao TCM_021482 I 0.940
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.940
MDP0000180408 Malus domestica MDP0000180408 I 0.940
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.939
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.939
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.939
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.939
MDP0000919694 Malus domestica MDP0000919694 I 0.939
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.938
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.937
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.936
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.936
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.936
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.936
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.935
Si034095m.g Setaria italica Si034095m.g I 0.935
Ca_10879 Cicer arietinum Ca_10879 I 0.935
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.935
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.935
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.934
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.933
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.931
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.931
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.931
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.928
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.927
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.927
MDP0000919693 Malus domestica MDP0000919693 I 0.927
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.926
F775_31139 Aegilops tauschii F775_31139 I 0.926
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.926
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.926
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.926
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.926
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.926
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.926
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.926
OB03G47050 Oryza brachyantha OB03G47050 I 0.925
OBART03G39900 Oryza barthii OBART03G39900 I 0.925
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.925
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.925
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.925
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.925
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.925
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.925
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.925
SPL6 Oryza sativa OS03G0833300 I 0.925
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.925
Cla021411 Citrullus lanatus Cla021411 I 0.925
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.923
SPL12 Arabidopsis thaliana AT3G60030 D 0.923
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.923
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.923
SPL1 Arabidopsis thaliana AT2G47070 D 0.922
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.922
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.922
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.921
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.920
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.919
Pm014154 Prunus mume Pm014154 I 0.919
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.919
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.918
mgf025134m Mimulus guttatus mgf025134m I 0.918
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.917
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.917
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.917
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.917
Ca_01036 Cicer arietinum Ca_01036 I 0.917
Pm008474 Prunus mume Pm008474 I 0.917
Pm008475 Prunus mume Pm008475 I 0.917
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.917
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.917
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.917
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.916
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.915
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.915
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.914
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.914
Si032170m.g Setaria italica Si032170m.g I 0.914
Ca_18591 Cicer arietinum Ca_18591 I 0.914
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.914
MDP0000180409 Malus domestica MDP0000180409 I 0.914
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.913
Bo6g120690 Brassica oleracea Bo6g120690 I 0.912
Bra015732 Brassica rapa Bra015732 I 0.912
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.912
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.912
Bra025863 Brassica rapa Bra025863 I 0.910
SPL14 Arabidopsis thaliana AT1G20980 D 0.909
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.909
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I 0.909
TCM_034803 Theobroma cacao TCM_034803 I 0.909
Cla017596 Citrullus lanatus Cla017596 I 0.909
Cucsa.192470 Cucumis sativus Cucsa.192470 I 0.909
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I 0.909
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.909
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.909
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.909
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.909
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I 0.909
PK11310.1 Cannabis sativa PK11310.1 I 0.909
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.908
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D 0.907
mgf001202m Mimulus guttatus mgf001202m I 0.907
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.907
Bo5g030930 Brassica oleracea Bo5g030930 I 0.906
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.906
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.905
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.905
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.904
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.904
OB04G27960 Oryza brachyantha OB04G27960 I 0.904
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.904
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.904
PK26639.1 Cannabis sativa PK26639.1 I 0.904
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I 0.902
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.902
OBART04G20940 Oryza barthii OBART04G20940 I 0.902
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.902
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.902
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.902
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.902
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.902
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.902
SPL7 Oryza sativa OS04G0551500 I 0.902
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.902
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.902
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.901
30170.m014245 Ricinus communis 30170.m014245 I 0.901
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.901
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.901
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.901
PK25661.1 Cannabis sativa PK25661.1 I 0.901
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.900
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.900
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.900
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I 0.900
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.900
Bo2g091010 Brassica oleracea Bo2g091010 I 0.899
mgf016414m Mimulus guttatus mgf016414m I 0.899
AT1G76580 Arabidopsis thaliana AT1G76580 D 0.898
F775_02791 Aegilops tauschii F775_02791 I 0.898
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.898
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I 0.898
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.898
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.898
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.898
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.898
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.898
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.898
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.897
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.896
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.896
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.896
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.896
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.896
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.896
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I 0.895
SPL15 Oryza indica BGIOSGA028994 I 0.895
LPERR08G17180 Leersia perrieri LPERR08G17180 I 0.895
OBART08G20320 Oryza barthii OBART08G20320 I 0.895
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I 0.895
OLONG_014873 Oryza longistaminata OLONG_014873 I 0.895
OMERI02G02300 Oryza meridionalis OMERI02G02300 I 0.895
ONIVA08G22940 Oryza nivara ONIVA08G22940 I 0.895
OPUNC08G18470 Oryza punctata OPUNC08G18470 I 0.895
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I 0.895
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I 0.895
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.895
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I 0.895
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.894
Si010262m.g Setaria italica Si010262m.g I 0.894
Cla009788 Citrullus lanatus Cla009788 I 0.894
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.894
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.893
Pm010075 Prunus mume Pm010075 I 0.893
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.893
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I 0.892
Pm017778 Prunus mume Pm017778 I 0.892
MDP0000149339 Malus domestica MDP0000149339 I 0.892
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.892
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.890
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I 0.890
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.889
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.888
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.888
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.888
MDP0000589558 Malus domestica MDP0000589558 I 0.888
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.887
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.887
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.887
OBART07G15570 Oryza barthii OBART07G15570 I 0.887
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.887
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.887
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.887
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.887
GRMZM2G138421 Zea mays GRMZM2G138421 I 0.886
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.886
Ca_24655 Cicer arietinum Ca_24655 I 0.886
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.886
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.886
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.886