Lus10011348.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10011348.g T323530_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL13A
M07265_2.00 		Arabidopsis thaliana
DNYGTACGGWH
DWCCGTACRNH		 Dap-seq
OMalley et al.(2016)
SPL13_col_a 		0.892 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10011348 SBP 25 99

Links

Other SBP family TFs
Other Linum usitatissimum TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.984
Si013747m.g Setaria italica Si013747m.g N 0.958
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.958
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.958
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.954
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.954
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.951
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.940
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.940
mgf003797m Mimulus guttatus mgf003797m I 0.939
mgf010913m Mimulus guttatus mgf010913m I 0.939
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.935
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.934
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.933
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.933
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.933
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.933
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.933
Ca_19449 Cicer arietinum Ca_19449 I 0.933
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.933
30138.m003942 Ricinus communis 30138.m003942 I 0.932
MDP0000146640 Malus domestica MDP0000146640 I 0.932
MDP0000778465 Malus domestica MDP0000778465 I 0.932
Bo3g042890 Brassica oleracea Bo3g042890 I 0.931
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.931
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.931
Cla018827 Citrullus lanatus Cla018827 I 0.931
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.930
TCM_014330 Theobroma cacao TCM_014330 I 0.930
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.930
Cla001541 Citrullus lanatus Cla001541 I 0.930
Cla019331 Citrullus lanatus Cla019331 I 0.930
30174.m009082 Ricinus communis 30174.m009082 I 0.930
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.930
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.930
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.930
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.930
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.930
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.929
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.928
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.928
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.927
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.927
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.926
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.925
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.925
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.925
SPL19 Oryza sativa OS11G0496600 I 0.925
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.925
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.924
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.923
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.923
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.923
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.923
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.922
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.922
SPL16 Oryza sativa OS08G0531600 I 0.922
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.922
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.921
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.920
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.918
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.918
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.918
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.916
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.915
29929.m004627 Ricinus communis 29929.m004627 I 0.915
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.915
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.915
TCM_008671 Theobroma cacao TCM_008671 I 0.914
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.914
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.914
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.913
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.913
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.912
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.911
PK17790.1 Cannabis sativa PK17790.1 I 0.908
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.907
Si001804m.g Setaria italica Si001804m.g I 0.907
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.907
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.907
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.905
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.903
OBART09G15750 Oryza barthii OBART09G15750 I 0.903
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.903
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.903
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.903
SPL18 Oryza sativa OS09G0507100 I 0.903
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.903
SapurV1A.0173s0270 Salix purpurea SapurV1A.0173s0270 I 0.902
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.899
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.899
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.899
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.899
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.899
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.898
Pm025028 Prunus mume Pm025028 I 0.898
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.898
POPTR_0003s16780 Populus trichocarpa POPTR_0003s16780 I 0.897
MDP0000589558 Malus domestica MDP0000589558 I 0.897
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.896
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.895
Bo9g097630 Brassica oleracea Bo9g097630 I 0.895
Thhalv10013892m.g Eutrema salsugineum Thhalv10013892m.g I 0.895
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.894
scaffold_801495.1 Arabidopsis lyrata scaffold_801495.1 I 0.894
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.894
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.894
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.894
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.894
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.893
TCM_011483 Theobroma cacao TCM_011483 I 0.893
Ca_24655 Cicer arietinum Ca_24655 I 0.893
Bostr.15774s0206 Boechera stricta Bostr.15774s0206 I 0.893
SPL13A Arabidopsis thaliana AT5G50570 I 0.892
SPL13A Arabidopsis thaliana AT5G50670 D 0.892
Bo3g024180 Brassica oleracea Bo3g024180 I 0.892
Cagra.0117s0007 Capsella grandiflora Cagra.0117s0007 I 0.892
Carubv10026628m.g Capsella rubella Carubv10026628m.g I 0.892
MDP0000142582 Malus domestica MDP0000142582 N 0.891
Bra022766 Brassica rapa Bra022766 I 0.889
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.887