Lus10018610.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10018610.g T323538_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.914 0.813
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.910 0.733
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.910 0.733
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.910 0.733
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.907 0.720
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.907 0.720
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.907 0.720
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.894 0.720
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.894 0.720
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.894 0.720
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.887 0.720
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10018610 SBP 86 160

Links

Other SBP family TFs
Other Linum usitatissimum TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.988
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.980
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.972
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.968
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.967
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.966
29983.m003158 Ricinus communis 29983.m003158 I 0.966
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.964
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.961
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.961
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.960
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.959
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.957
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.955
Pm014154 Prunus mume Pm014154 I 0.955
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.955
Bra021880 Brassica rapa Bra021880 I 0.952
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.951
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.951
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.950
30190.m011329 Ricinus communis 30190.m011329 I 0.950
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.949
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.948
PK26639.1 Cannabis sativa PK26639.1 I 0.948
Cla023735 Citrullus lanatus Cla023735 I 0.946
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.946
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.946
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.945
Cla009788 Citrullus lanatus Cla009788 I 0.944
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.943
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.943
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.943
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.943
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.943
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.943
Pm011381 Prunus mume Pm011381 I 0.943
MDP0000158607 Malus domestica MDP0000158607 I 0.943
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.942
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.942
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.942
Si032170m.g Setaria italica Si032170m.g I 0.941
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.941
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.940
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.940
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.940
Ca_16243 Cicer arietinum Ca_16243 I 0.940
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.940
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.939
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.936
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.934
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.933
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.931
Pm010075 Prunus mume Pm010075 I 0.931
Cla021411 Citrullus lanatus Cla021411 I 0.929
TCM_008150 Theobroma cacao TCM_008150 I 0.927
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.927
mgf011616m Mimulus guttatus mgf011616m I 0.926
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.926
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.925
Bra038324 Brassica rapa Bra038324 I 0.924
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.924
SPL6 Arabidopsis thaliana AT1G69170 I 0.923
MDP0000156994 Malus domestica MDP0000156994 I 0.923
MDP0000861601 Malus domestica MDP0000861601 I 0.923
Bo2g062840 Brassica oleracea Bo2g062840 I 0.922
TCM_029832 Theobroma cacao TCM_029832 I 0.922
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.921
mgf016414m Mimulus guttatus mgf016414m I 0.921
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.920
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.920
OB04G27960 Oryza brachyantha OB04G27960 I 0.920
OBART04G20940 Oryza barthii OBART04G20940 I 0.920
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.920
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.920
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.920
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.920
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.920
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.920
SPL7 Oryza sativa OS04G0551500 I 0.920
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.920
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.920
MDP0000171877 Malus domestica MDP0000171877 I 0.920
MDP0000246046 Malus domestica MDP0000246046 I 0.920
MDP0000865739 Malus domestica MDP0000865739 I 0.920
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.919
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.919
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.919
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.919
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.917
Pm030597 Prunus mume Pm030597 I 0.917
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.917
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.917
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.917
Bo4g042390 Brassica oleracea Bo4g042390 I 0.916
Bra005470 Brassica rapa Bra005470 I 0.916
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.916
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.916
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.915
OBART07G15570 Oryza barthii OBART07G15570 I 0.915
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.915
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.915
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.915
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.915
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.915
mgf017351m Mimulus guttatus mgf017351m I 0.915
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.915
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.915
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.914
PK22320.1 Cannabis sativa PK22320.1 D 0.914
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.913
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.912
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.912
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.912
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.912
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.911
SPL5 Arabidopsis thaliana AT3G15270 D 0.910
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.910
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.909
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.909
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.909
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.909
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.909
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.909
MDP0000589558 Malus domestica MDP0000589558 I 0.908
SPL3 Arabidopsis thaliana AT2G33810 D 0.907
F775_02791 Aegilops tauschii F775_02791 I 0.907
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.907
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.907
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.907
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.907
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.906
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.906
Bo3g027460 Brassica oleracea Bo3g027460 I 0.905
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.904
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.903
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.903
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.903
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.903
Si010262m.g Setaria italica Si010262m.g I 0.903
Ca_24655 Cicer arietinum Ca_24655 I 0.903
30174.m008805 Ricinus communis 30174.m008805 I 0.903
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.903
Cla002263 Citrullus lanatus Cla002263 I 0.902
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.902
Bra022954 Brassica rapa Bra022954 I 0.901
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.901
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.901
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.901
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.901
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.899
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.899
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.899
TCM_005620 Theobroma cacao TCM_005620 I 0.899
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.899
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.898
28211.m000132 Ricinus communis 28211.m000132 I 0.898
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.898
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.898
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.897
TCM_031595 Theobroma cacao TCM_031595 I 0.896
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.896
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.896
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.896
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.895
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.895
SPL14 Arabidopsis thaliana AT1G20980 D 0.894
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.894
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.894
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.894
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.894
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.894
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.894
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.894
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.894
Ca_10879 Cicer arietinum Ca_10879 I 0.893
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.893
Bra038101 Brassica rapa Bra038101 I 0.892
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.892
Ca_00320 Cicer arietinum Ca_00320 I 0.892
Cla020006 Citrullus lanatus Cla020006 I 0.892
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.891
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.891
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.890
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.889
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.888
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.888
SPL4 Arabidopsis thaliana AT1G53160 D 0.887
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.887
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.887
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.887
Bo6g120690 Brassica oleracea Bo6g120690 I 0.886
Bra015732 Brassica rapa Bra015732 I 0.886
Bra025863 Brassica rapa Bra025863 I 0.886
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.886
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.886