CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Lus10042882.g
(
Linum usitatissimum
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03110 (SBP)
IPR004333
Lus10042882.g
T323550_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.981
0.907
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN
NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.933
0.773
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN
NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.931
0.773
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10042882
SBP
178
252
CQAEGCTADLTHAKHYHRRHKVCEFHSKASTILAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRGRKS
Links
Other
SBP
family TFs
Other
Linum usitatissimum
TFs
123 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30174.m008803
Ricinus communis
30174.m008803
I
0.984
AMTR_s00019p00235390
Amborella trichopoda
AMTR_s00019p00235390
I
0.928
AMTR_s00106p00144050
Amborella trichopoda
AMTR_s00106p00144050
I
0.892
Aquca_024_00116
Aquilegia coerulea
Aquca_024_00116
I
0.950
BGIOSGA007655
Oryza indica
BGIOSGA007655
I
0.935
BGIOSGA017275
Oryza indica
BGIOSGA017275
I
0.918
Bo5g001290
Brassica oleracea
Bo5g001290
I
0.981
Bo8g118210
Brassica oleracea
Bo8g118210
I
0.981
Bostr.5325s0127
Boechera stricta
Bostr.5325s0127
I
0.981
Bra032662
Brassica rapa
Bra032662
I
0.981
Bra033221
Brassica rapa
Bra033221
I
0.981
BRADI1G31390
Brachypodium distachyon
BRADI1G31390
I
0.900
BRADI3G05720
Brachypodium distachyon
BRADI3G05720
I
0.899
BRADI5G24670
Brachypodium distachyon
BRADI5G24670
I
0.918
Cagra.1968s0141
Capsella grandiflora
Cagra.1968s0141
I
0.981
Carubv10009506m.g
Capsella rubella
Carubv10009506m.g
I
0.981
cassava13944.valid.m1
Manihot esculenta
cassava13944.valid.m1
I
0.972
cassava19899.m1
Manihot esculenta
cassava19899.m1
I
0.984
Ca_18942
Cicer arietinum
Ca_18942
I
0.984
Ciclev10021106m.g
Citrus clementina
Ciclev10021106m.g
I
0.984
Cla006776
Citrullus lanatus
Cla006776
I
0.983
Cla020006
Citrullus lanatus
Cla020006
I
0.897
Cucsa.120620
Cucumis sativus
Cucsa.120620
I
0.974
Cucsa.126820
Cucumis sativus
Cucsa.126820
I
0.891
Eucgr.E01600
Eucalyptus grandis
Eucgr.E01600
I
0.984
evm.TU.supercontig_149.10
Carica papaya
evm.TU.supercontig_149.10
I
0.984
fgenesh1_pg.scaffold_118000004
Physcomitrella patens
fgenesh1_pg.scaffold_118000004
I
0.916
fgenesh1_pg.scaffold_194000034
Physcomitrella patens
fgenesh1_pg.scaffold_194000034
D
0.931
fgenesh1_pg.scaffold_23000047
Physcomitrella patens
fgenesh1_pg.scaffold_23000047
I
0.957
fgenesh1_pg.scaffold_252000020
Physcomitrella patens
fgenesh1_pg.scaffold_252000020
D
0.933
fgenesh1_pg.scaffold_337000032
Physcomitrella patens
fgenesh1_pg.scaffold_337000032
I
0.954
fgenesh1_pg.scaffold_50000085
Physcomitrella patens
fgenesh1_pg.scaffold_50000085
I
0.930
gene04786-v1.0-hybrid
Fragaria vesca
gene04786-v1.0-hybrid
I
0.984
GLYMA01G15258
Glycine max
GLYMA01G15258
I
0.976
GLYMA03G27180
Glycine max
GLYMA03G27180
I
0.984
GLYMA07G14610
Glycine max
GLYMA07G14610
I
0.984
Gorai.001G176000
Gossypium raimondii
Gorai.001G176000
I
0.984
Gorai.008G107400
Gossypium raimondii
Gorai.008G107400
I
0.984
GRMZM2G036297
Zea mays
GRMZM2G036297
I
0.918
GRMZM2G058588
Zea mays
GRMZM2G058588
I
0.915
GRMZM2G101499
Zea mays
GRMZM2G101499
I
0.903
GRMZM2G111136
Zea mays
GRMZM2G111136
I
0.899
GRMZM2G168229
Zea mays
GRMZM2G168229
I
0.923
GSMUA_Achr10G06210_001
Musa acuminata
GSMUA_Achr10G06210_001
I
0.944
GSMUA_Achr2G11940_001
Musa acuminata
GSMUA_Achr2G11940_001
I
0.949
GSMUA_Achr3G00810_001
Musa acuminata
GSMUA_Achr3G00810_001
I
0.934
GSMUA_Achr4G20590_001
Musa acuminata
GSMUA_Achr4G20590_001
I
0.941
GSMUA_Achr4G24610_001
Musa acuminata
GSMUA_Achr4G24610_001
I
0.946
GSMUA_Achr4G28960_001
Musa acuminata
GSMUA_Achr4G28960_001
I
0.954
GSMUA_Achr7G05010_001
Musa acuminata
GSMUA_Achr7G05010_001
I
0.911
GSMUA_Achr7G08750_001
Musa acuminata
GSMUA_Achr7G08750_001
I
0.956
LPERR02G05080
Leersia perrieri
LPERR02G05080
I
0.904
LPERR04G23580
Leersia perrieri
LPERR04G23580
I
0.918
LPERR06G19480
Leersia perrieri
LPERR06G19480
I
0.907
Lus10028181.g
Linum usitatissimum
Lus10028181.g
I
0.987
MDP0000803116
Malus domestica
MDP0000803116
I
0.984
mgf016085m
Mimulus guttatus
mgf016085m
I
0.984
MLOC_326
Hordeum vulgare
MLOC_326
I
0.907
MLOC_51510
Hordeum vulgare
MLOC_51510
I
0.892
MLOC_57503
Hordeum vulgare
MLOC_57503
I
0.918
MTR_8g005960
Medicago truncatula
MTR_8g005960
I
0.983
OB02G15090
Oryza brachyantha
OB02G15090
I
0.904
OB04G34990
Oryza brachyantha
OB04G34990
I
0.918
OB06G31100
Oryza brachyantha
OB06G31100
I
0.907
OBART04G27990
Oryza barthii
OBART04G27990
I
0.918
OGLUM04G27880
Oryza glumaepatula
OGLUM04G27880
I
0.918
OGLUM06G24700
Oryza glumaepatula
OGLUM06G24700
I
0.907
OLONG_021174
Oryza longistaminata
OLONG_021174
I
0.918
OMERI02G06720
Oryza meridionalis
OMERI02G06720
I
0.935
OMERI04G23390
Oryza meridionalis
OMERI04G23390
I
0.918
OMERI06G23430
Oryza meridionalis
OMERI06G23430
I
0.907
ONIVA01G24470
Oryza nivara
ONIVA01G24470
I
0.907
ONIVA04G26660
Oryza nivara
ONIVA04G26660
I
0.918
OPUNC02G05050
Oryza punctata
OPUNC02G05050
I
0.915
OPUNC04G25460
Oryza punctata
OPUNC04G25460
I
0.918
OPUNC06G21190
Oryza punctata
OPUNC06G21190
I
0.907
orange1.1g020302m.g
Citrus sinensis
orange1.1g020302m.g
I
0.984
ORGLA02G0053800
Oryza glaberrima
ORGLA02G0053800
I
0.935
ORGLA04G0242500
Oryza glaberrima
ORGLA04G0242500
I
0.918
ORGLA06G0196600
Oryza glaberrima
ORGLA06G0196600
I
0.907
ORUFI04G29620
Oryza rufipogon
ORUFI04G29620
I
0.918
ORUFI06G25170
Oryza rufipogon
ORUFI06G25170
I
0.907
Pavir.Ab00520
Panicum virgatum
Pavir.Ab00520
I
0.911
Pavir.Da00293
Panicum virgatum
Pavir.Da00293
I
0.907
Pavir.Db00525
Panicum virgatum
Pavir.Db00525
I
0.907
Pavir.Ga00066
Panicum virgatum
Pavir.Ga00066
I
0.918
Pavir.Gb00284
Panicum virgatum
Pavir.Gb00284
I
0.918
PGSC0003DMG400026027
Solanum tuberosum
PGSC0003DMG400026027
I
0.984
PGSC0003DMG400029162
Solanum tuberosum
PGSC0003DMG400029162
I
0.984
PK25779.1
Cannabis sativa
PK25779.1
I
0.984
Pm017777
Prunus mume
Pm017777
I
0.978
POPTR_0002s14320
Populus trichocarpa
POPTR_0002s14320
I
0.984
POPTR_0014s05680
Populus trichocarpa
POPTR_0014s05680
I
0.984
PRUPE_ppa008560mg
Prunus persica
PRUPE_ppa008560mg
I
0.978
SapurV1A.0033s0300
Salix purpurea
SapurV1A.0033s0300
I
0.983
SapurV1A.0382s0100
Salix purpurea
SapurV1A.0382s0100
I
0.984
Sb04g005180
Sorghum bicolor
Sb04g005180
I
0.899
Sb06g031290
Sorghum bicolor
Sb06g031290
I
0.918
Sb10g026200
Sorghum bicolor
Sb10g026200
I
0.907
SELMODRAFT_17706
Selaginella moellendorffii
SELMODRAFT_17706
I
0.933
SELMODRAFT_17777
Selaginella moellendorffii
SELMODRAFT_17777
I
0.927
SELMODRAFT_28629
Selaginella moellendorffii
SELMODRAFT_28629
I
0.927
SELMODRAFT_28630
Selaginella moellendorffii
SELMODRAFT_28630
I
0.933
SELMODRAFT_49502
Selaginella moellendorffii
SELMODRAFT_49502
I
0.949
SELMODRAFT_59543
Selaginella moellendorffii
SELMODRAFT_59543
I
0.949
SELMODRAFT_59884
Selaginella moellendorffii
SELMODRAFT_59884
I
0.927
SELMODRAFT_7674
Selaginella moellendorffii
SELMODRAFT_7674
I
0.927
Si006559m.g
Setaria italica
Si006559m.g
I
0.907
Si017338m.g
Setaria italica
Si017338m.g
I
0.923
Si022315m.g
Setaria italica
Si022315m.g
I
0.918
Solyc01g090730.2
Solanum lycopersicum
Solyc01g090730.2
I
0.984
Solyc10g018780.1
Solanum lycopersicum
Solyc10g018780.1
I
0.984
SPL10
Oryza indica
BGIOSGA023408
I
0.907
SPL10
Oryza sativa
OS06G0659100
I
0.907
SPL5
Oryza sativa
OS02G0177300
I
0.935
SPL8
Arabidopsis thaliana
AT1G02065
D
0.981
SPL8
Arabidopsis lyrata
fgenesh2_kg.1__23__AT1G02065.1
I
0.981
SPL8
Oryza sativa
OS04G0656500
I
0.918
SPL8
Vitis vinifera
VIT_15s0021g02300
I
0.983
TCM_005622
Theobroma cacao
TCM_005622
I
0.984
Thhalv10008083m.g
Eutrema salsugineum
Thhalv10008083m.g
I
0.981
Traes_7DL_ED348696E
Triticum aestivum
Traes_7DL_ED348696E
I
0.907
TRIUR3_34351
Triticum urartu
TRIUR3_34351
I
0.918