orange1.1g002868m.g (Citrus sinensis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 orange1.1g002868m.g T323595_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.921 0.961
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.896 0.882
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.896 0.882
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.896 0.882
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.887 0.882
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.887 0.882
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.887 0.882
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.887 0.882
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g002868m SBP 26 58
orange1.1g002916m SBP 1 51
orange1.1g002919m SBP 1 51
orange1.1g002922m SBP 1 51
orange1.1g003138m SBP 1 31

Links

Other SBP family TFs
Other Citrus sinensis TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g005730 Brassica oleracea Bo4g005730 I 0.921
Bra041037 Brassica rapa Bra041037 I 0.921
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.921
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.921
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.921
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.921
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.921
OB08G27190 Oryza brachyantha OB08G27190 I 0.921
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.921
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.921
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.921
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.921
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.921
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.921
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.921
TCM_004922 Theobroma cacao TCM_004922 I 0.921
TCM_021482 Theobroma cacao TCM_021482 I 0.921
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.921
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.921
Ca_03548 Cicer arietinum Ca_03548 I 0.921
29889.m003388 Ricinus communis 29889.m003388 I 0.921
30076.m004574 Ricinus communis 30076.m004574 I 0.921
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.921
mgf009459m Mimulus guttatus mgf009459m I 0.921
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.921
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.921
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.921
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.921
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.921
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.921
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.921
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.921
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.921
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.921
MDP0000180408 Malus domestica MDP0000180408 I 0.921
MDP0000919694 Malus domestica MDP0000919694 I 0.921
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.921
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.921
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.921
PK06791.1 Cannabis sativa PK06791.1 D 0.921
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.921
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.919
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.919
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.915
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.915
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.915
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.907
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I 0.906
MDP0000919693 Malus domestica MDP0000919693 I 0.903
F775_31139 Aegilops tauschii F775_31139 I 0.901
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.901
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.901
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.901
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.901
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.901
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.901
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.901
BGIOSGA009504 Oryza indica BGIOSGA009504 I 0.900
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.900
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.900
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I 0.900
OB03G47050 Oryza brachyantha OB03G47050 I 0.900
OBART03G39900 Oryza barthii OBART03G39900 I 0.900
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.900
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.900
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.900
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.900
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.900
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.900
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.900
SPL6 Oryza sativa OS03G0833300 I 0.900
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.900
Si034095m.g Setaria italica Si034095m.g I 0.900
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.900
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.900
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.898
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.897
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.897
SPL1 Arabidopsis thaliana AT2G47070 D 0.896
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.896
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.896
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.896
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.896
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.896
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I 0.895
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.895
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I 0.891
Pm008474 Prunus mume Pm008474 I 0.891
Pm008475 Prunus mume Pm008475 I 0.891
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.890
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.889
SPL14 Arabidopsis thaliana AT1G20980 D 0.887
Bo5g030930 Brassica oleracea Bo5g030930 I 0.887
Bo6g120690 Brassica oleracea Bo6g120690 I 0.887
Bra015732 Brassica rapa Bra015732 I 0.887
Bra025863 Brassica rapa Bra025863 I 0.887
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.887
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.887
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.887
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.887
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.887
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.887
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D 0.887
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I 0.887
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.887
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.887
TCM_034803 Theobroma cacao TCM_034803 I 0.887
Ca_01036 Cicer arietinum Ca_01036 I 0.887
Ca_18591 Cicer arietinum Ca_18591 I 0.887
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.887
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I 0.887
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.887
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.887
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.887
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.887
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.887
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I 0.887
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.887
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.886
MDP0000180409 Malus domestica MDP0000180409 I 0.886