Pavir.J28847 (Panicum virgatum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Pavir.J28847 T323646_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J28847.1.p SBP 28 102

Links

Other SBP family TFs
Other Panicum virgatum TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si013747m.g Setaria italica Si013747m.g N 0.986
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.986
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.985
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.985
BRADI4G34667 Brachypodium distachyon BRADI4G34667 I 0.974
GRMZM2G061734 Zea mays GRMZM2G061734 I 0.974
Sb02g029300 Sorghum bicolor Sb02g029300 I 0.974
OGLUM08G22810 Oryza glumaepatula OGLUM08G22810 I 0.971
OMERI06G13610 Oryza meridionalis OMERI06G13610 I 0.971
SPL16 Oryza sativa OS08G0531600 I 0.971
ORGLA08G0230100 Oryza glaberrima ORGLA08G0230100 I 0.969
LPERR08G18310 Leersia perrieri LPERR08G18310 I 0.968
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.968
SPL19 Oryza sativa OS11G0496600 I 0.968
OPUNC08G19660 Oryza punctata OPUNC08G19660 I 0.967
BRADI3G41250 Brachypodium distachyon BRADI3G41250 I 0.966
ONIVA08G24550 Oryza nivara ONIVA08G24550 I 0.964
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.961
Si001804m.g Setaria italica Si001804m.g I 0.959
Gorai.012G185700 Gossypium raimondii Gorai.012G185700 N 0.959
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.959
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.959
Lus10011348.g Linum usitatissimum Lus10011348.g I 0.958
GRMZM2G101511 Zea mays GRMZM2G101511 N 0.956
LPERR09G11920 Leersia perrieri LPERR09G11920 I 0.956
Sb07g026220 Sorghum bicolor Sb07g026220 N 0.956
OBART09G15750 Oryza barthii OBART09G15750 I 0.955
OGLUM09G16320 Oryza glumaepatula OGLUM09G16320 I 0.955
ONIVA09G16860 Oryza nivara ONIVA09G16860 I 0.955
SPL18 Oryza sativa OS09G0507100 I 0.955
Lus10003126.g Linum usitatissimum Lus10003126.g N 0.954
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.953
Pm025028 Prunus mume Pm025028 I 0.953
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.953
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.953
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.953
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.952
TCM_011483 Theobroma cacao TCM_011483 I 0.951
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.945
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.944
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.941
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.940
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.940
Cla001541 Citrullus lanatus Cla001541 I 0.940
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.940
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.939
ORUFI08G24030 Oryza rufipogon ORUFI08G24030 N 0.938
MDP0000119458 Malus domestica MDP0000119458 I 0.938
MDP0000193702 Malus domestica MDP0000193702 I 0.938
MLOC_52321 Hordeum vulgare MLOC_52321 I 0.937
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.937
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.937
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.936
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.935
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.935
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.935
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.935
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.935
Ca_19449 Cicer arietinum Ca_19449 I 0.935
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.935
MDP0000146640 Malus domestica MDP0000146640 I 0.935
MDP0000778465 Malus domestica MDP0000778465 I 0.935
LPERR01G36700 Leersia perrieri LPERR01G36700 I 0.934
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.933
Sb03g044160 Sorghum bicolor Sb03g044160 I 0.933
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.933
TCM_014330 Theobroma cacao TCM_014330 I 0.933
Cla018827 Citrullus lanatus Cla018827 I 0.933
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.932
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.932
Cla019331 Citrullus lanatus Cla019331 I 0.932
30174.m009082 Ricinus communis 30174.m009082 I 0.932
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.932
mgf003797m Mimulus guttatus mgf003797m I 0.932
mgf010913m Mimulus guttatus mgf010913m I 0.932
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.932
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.932
BGIOSGA005075 Oryza indica BGIOSGA005075 I 0.931
GSMUA_Achr11G19580_001 Musa acuminata GSMUA_Achr11G19580_001 I 0.931
OGLUM01G46420 Oryza glumaepatula OGLUM01G46420 I 0.931
OMERI01G39190 Oryza meridionalis OMERI01G39190 I 0.931
ONIVA01G48230 Oryza nivara ONIVA01G48230 I 0.931
OPUNC01G41070 Oryza punctata OPUNC01G41070 I 0.931
ORGLA01G0361700 Oryza glaberrima ORGLA01G0361700 I 0.931
ORUFI01G45560 Oryza rufipogon ORUFI01G45560 I 0.931
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.930
30138.m003942 Ricinus communis 30138.m003942 I 0.930
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.930
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.929
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.929
Gorai.002G181700 Gossypium raimondii Gorai.002G181700 I 0.928
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.928
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.927
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.927
Si026656m.g Setaria italica Si026656m.g I 0.927
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.927
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.926
PK17790.1 Cannabis sativa PK17790.1 I 0.926
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.925
Bo3g042890 Brassica oleracea Bo3g042890 I 0.924
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.924
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.924
BRADI2G59110 Brachypodium distachyon BRADI2G59110 I 0.923
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.923
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.923
GSMUA_AchrUn_randomG08380_001 Musa acuminata GSMUA_AchrUn_randomG08380_001 I 0.920
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.920
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.920
TCM_008671 Theobroma cacao TCM_008671 I 0.919
Aquca_011_00114 Aquilegia coerulea Aquca_011_00114 I 0.919
Gorai.008G166000 Gossypium raimondii Gorai.008G166000 I 0.919
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.919
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.918
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.915
GSMUA_AchrUn_randomG21900_001 Musa acuminata GSMUA_AchrUn_randomG21900_001 I 0.915
GRMZM2G106798 Zea mays GRMZM2G106798 I 0.914
SPL6 Arabidopsis thaliana AT1G69170 I 0.913
OS01G0922600 Oryza sativa OS01G0922600 I 0.912
Gorai.005G164600 Gossypium raimondii Gorai.005G164600 I 0.912
Ciclev10032171m.g Citrus clementina Ciclev10032171m.g I 0.911
orange1.1g021420m.g Citrus sinensis orange1.1g021420m.g I 0.911
OBART01G42150 Oryza barthii OBART01G42150 I 0.910
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.909
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.909
Pm030597 Prunus mume Pm030597 I 0.909
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.909
GSMUA_Achr6G06030_001 Musa acuminata GSMUA_Achr6G06030_001 I 0.908
MDP0000142582 Malus domestica MDP0000142582 N 0.908
PK19500.1 Cannabis sativa PK19500.1 I 0.908
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.907
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.907
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.906
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.906
GRMZM2G371033 Zea mays GRMZM2G371033 I 0.905
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.903
GSMUA_Achr9G29330_001 Musa acuminata GSMUA_Achr9G29330_001 I 0.903
cassava42933.valid.m1 Manihot esculenta cassava42933.valid.m1 I 0.903
cassava6548.valid.m1 Manihot esculenta cassava6548.valid.m1 I 0.903
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.902
GSMUA_Achr2G06150_001 Musa acuminata GSMUA_Achr2G06150_001 I 0.901
MDP0000589558 Malus domestica MDP0000589558 I 0.900
Eucgr.K02708 Eucalyptus grandis Eucgr.K02708 I 0.899
GSMUA_Achr6G27520_001 Musa acuminata GSMUA_Achr6G27520_001 I 0.898
VIT_01s0010g03910 Vitis vinifera VIT_01s0010g03910 I 0.898
Ca_24655 Cicer arietinum Ca_24655 I 0.898
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.898
MDP0000171877 Malus domestica MDP0000171877 I 0.898
MDP0000246046 Malus domestica MDP0000246046 I 0.898
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.898
29929.m004627 Ricinus communis 29929.m004627 I 0.895
Lus10015764.g Linum usitatissimum Lus10015764.g I 0.895
GLYMA08G01450 Glycine max GLYMA08G01450 I 0.894
PK02140.1 Cannabis sativa PK02140.1 I 0.893
TCM_014668 Theobroma cacao TCM_014668 I 0.892
evm.TU.supercontig_1141.2 Carica papaya evm.TU.supercontig_1141.2 I 0.892
AMTR_s00013p00150040 Amborella trichopoda AMTR_s00013p00150040 I 0.891
GLYMA05G38180 Glycine max GLYMA05G38180 I 0.891
MTR_8g096780 Medicago truncatula MTR_8g096780 I 0.891
Ca_05711 Cicer arietinum Ca_05711 I 0.891
SELMODRAFT_28634 Selaginella moellendorffii SELMODRAFT_28634 N 0.890
SELMODRAFT_28635 Selaginella moellendorffii SELMODRAFT_28635 N 0.890
Ciclev10031834m.g Citrus clementina Ciclev10031834m.g I 0.890
orange1.1g016971m.g Citrus sinensis orange1.1g016971m.g I 0.890
Bra038324 Brassica rapa Bra038324 I 0.889
POPTR_0015s11100 Populus trichocarpa POPTR_0015s11100 I 0.889
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.887
POPTR_0012s10260 Populus trichocarpa POPTR_0012s10260 I 0.887
PRUPE_ppa006611mg Prunus persica PRUPE_ppa006611mg I 0.887
Si010262m.g Setaria italica Si010262m.g I 0.887
Cla002666 Citrullus lanatus Cla002666 I 0.887
Pm024528 Prunus mume Pm024528 I 0.887
Cucsa.392170 Cucumis sativus Cucsa.392170 I 0.887
Bo2g062840 Brassica oleracea Bo2g062840 I 0.886
gene06295-v1.0-hybrid Fragaria vesca gene06295-v1.0-hybrid I 0.886
SapurV1A.1018s0120 Salix purpurea SapurV1A.1018s0120 I 0.886