Carubv10000608m.g (Capsella rubella)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Carubv10000608m.g T324161_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000608m Sigma 70 323 395

Links

Other Sigma 70 family TFs
Other Capsella rubella TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 1.000
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 1.000
SIGE Arabidopsis thaliana AT5G24120 N 0.986
Bo9g013770 Brassica oleracea Bo9g013770 N 0.986
Bra026466 Brassica rapa Bra026466 N 0.986
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.986
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.986
PK06897.1 Cannabis sativa PK06897.1 N 0.942
Bo7g097160 Brassica oleracea Bo7g097160 N 0.929
Bra009735 Brassica rapa Bra009735 N 0.929
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.915
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.914
SIGE Vitis vinifera VIT_16s0050g02520 N 0.899
Cla004302 Citrullus lanatus Cla004302 N 0.899
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.899
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.899
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.889
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.886
mgf006107m Mimulus guttatus mgf006107m N 0.886
MDP0000831937 Malus domestica MDP0000831937 N 0.886
mgf001401m Mimulus guttatus mgf001401m N 0.884
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.884
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.884
Pm019782 Prunus mume Pm019782 N 0.871
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.870
Ca_03953 Cicer arietinum Ca_03953 N 0.870
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.870
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.870
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.857
TCM_015349 Theobroma cacao TCM_015349 N 0.855
30169.m006532 Ricinus communis 30169.m006532 N 0.855
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.855
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.843
SapurV1A.0377s0060 Salix purpurea SapurV1A.0377s0060 N 0.843
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.841
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.841
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.841
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.826
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.812
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.812
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.797
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.783
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.768
LPERR05G23180 Leersia perrieri LPERR05G23180 N 0.725
OB05G35020 Oryza brachyantha OB05G35020 N 0.725
Si021904m.g Setaria italica Si021904m.g N 0.725
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.714
BGIOSGA020460 Oryza indica BGIOSGA020460 N 0.710
OBART05G27520 Oryza barthii OBART05G27520 N 0.710
OGLUM05G29030 Oryza glumaepatula OGLUM05G29030 N 0.710
OLONG_028119 Oryza longistaminata OLONG_028119 N 0.710
OMERI05G23510 Oryza meridionalis OMERI05G23510 N 0.710
ONIVA05G29570 Oryza nivara ONIVA05G29570 N 0.710
OPUNC05G25110 Oryza punctata OPUNC05G25110 N 0.710
ORGLA05G0239100 Oryza glaberrima ORGLA05G0239100 N 0.710
ORUFI05G29480 Oryza rufipogon ORUFI05G29480 N 0.710