Lus10020365.g (Linum usitatissimum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Lus10020365.g T324207_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10020365 Sigma 70 280 349

Links

Other Sigma 70 family TFs
Other Linum usitatissimum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA09G35750 Glycine max GLYMA09G35750 N 0.843
GLYMA12G01600 Glycine max GLYMA12G01600 N 0.843
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N 0.843
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N 0.839
SIGA Vitis vinifera VIT_16s0039g00660 N 0.829
Ca_22622 Cicer arietinum Ca_22622 N 0.829
Cla006897 Citrullus lanatus Cla006897 N 0.829
Cucsa.073340 Cucumis sativus Cucsa.073340 N 0.829
mgf004750m Mimulus guttatus mgf004750m N 0.829
mgf016433m Mimulus guttatus mgf016433m N 0.829
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N 0.829
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N 0.829
MDP0000934360 Malus domestica MDP0000934360 N 0.829
MDP0000939377 Malus domestica MDP0000939377 N 0.829
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N 0.829
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N 0.817
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N 0.814
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.814
Ca_22625 Cicer arietinum Ca_22625 N 0.814
SapurV1A.0592s0030 Salix purpurea SapurV1A.0592s0030 N 0.814
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N 0.814
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N 0.814
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N 0.803
Pm019567 Prunus mume Pm019567 N 0.803
30148.m001468 Ricinus communis 30148.m001468 N 0.803
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N 0.803
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N 0.803
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N 0.803
PK03826.1 Cannabis sativa PK03826.1 N 0.803
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.800
Bo2g097550 Brassica oleracea Bo2g097550 N 0.800
Bra008513 Brassica rapa Bra008513 N 0.800
TCM_025640 Theobroma cacao TCM_025640 N 0.800
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N 0.800
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N 0.800
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N 0.800
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.800
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N 0.789
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N 0.786
SIGA Arabidopsis thaliana AT1G64860 N 0.775
SIGA Arabidopsis lyrata scaffold_200883.1 N 0.775
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N 0.775
Carubv10020145m.g Capsella rubella Carubv10020145m.g N 0.775
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N 0.775
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N 0.771
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.771
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.771
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.757
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.757
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.746
mgf015154m Mimulus guttatus mgf015154m N 0.729
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.709
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.700