SapurV1A.0377s0060 (Salix purpurea)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 SapurV1A.0377s0060 T324241_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0377s0060.1.p Sigma 70 280 351
SapurV1A.0377s0060.2.p Sigma 70 280 351
SapurV1A.0377s0060.3.p Sigma 70 280 351
SapurV1A.0377s0060.4.p Sigma 70 280 351
SapurV1A.0377s0060.5.p Sigma 70 280 351

Links

Other Sigma 70 family TFs
Other Salix purpurea TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s01430 Populus trichocarpa POPTR_0012s01430 N 0.957
POPTR_0015s02320 Populus trichocarpa POPTR_0015s02320 N 0.943
SIGE Vitis vinifera VIT_16s0050g02520 N 0.928
Ciclev10004760m.g Citrus clementina Ciclev10004760m.g N 0.928
gene13107-v1.0-hybrid Fragaria vesca gene13107-v1.0-hybrid N 0.928
Gorai.008G270500 Gossypium raimondii Gorai.008G270500 N 0.928
orange1.1g010092m.g Citrus sinensis orange1.1g010092m.g N 0.928
PRUPE_ppa004259mg Prunus persica PRUPE_ppa004259mg N 0.913
Cla004302 Citrullus lanatus Cla004302 N 0.899
cassava7220.valid.m1 Manihot esculenta cassava7220.valid.m1 N 0.899
Cucsa.012950 Cucumis sativus Cucsa.012950 N 0.899
MDP0000831937 Malus domestica MDP0000831937 N 0.899
SapurV1A.1227s0040 Salix purpurea SapurV1A.1227s0040 N 0.899
SapurV1A.4845s0010 Salix purpurea SapurV1A.4845s0010 N 0.899
PK06897.1 Cannabis sativa PK06897.1 N 0.899
GLYMA04G41691 Glycine max GLYMA04G41691 N 0.884
TCM_015349 Theobroma cacao TCM_015349 N 0.884
Ca_03953 Cicer arietinum Ca_03953 N 0.884
evm.TU.supercontig_3.54 Carica papaya evm.TU.supercontig_3.54 N 0.884
GLYMA06G13100 Glycine max GLYMA06G13100 N 0.870
Pm019782 Prunus mume Pm019782 N 0.870
cassava29286.valid.m1 Manihot esculenta cassava29286.valid.m1 N 0.870
PGSC0003DMG400009072 Solanum tuberosum PGSC0003DMG400009072 N 0.857
30169.m006532 Ricinus communis 30169.m006532 N 0.855
mgf006107m Mimulus guttatus mgf006107m N 0.855
Aquca_037_00091 Aquilegia coerulea Aquca_037_00091 N 0.855
Bostr.10199s0021 Boechera stricta Bostr.10199s0021 N 0.843
Cagra.8922s0001 Capsella grandiflora Cagra.8922s0001 N 0.843
Carubv10000608m.g Capsella rubella Carubv10000608m.g N 0.843
SIGE Arabidopsis thaliana AT5G24120 N 0.841
Bo9g013770 Brassica oleracea Bo9g013770 N 0.841
Bra026466 Brassica rapa Bra026466 N 0.841
SIGE Arabidopsis lyrata fgenesh2_kg.6__2403__AT5G24120.1 N 0.841
GLYMA13G08390 Glycine max GLYMA13G08390 N 0.841
GLYMA14G31370 Glycine max GLYMA14G31370 N 0.841
MTR_3g090900 Medicago truncatula MTR_3g090900 N 0.841
mgf001401m Mimulus guttatus mgf001401m N 0.841
Thhalv10004166m.g Eutrema salsugineum Thhalv10004166m.g N 0.841
Solyc03g007370.2 Solanum lycopersicum Solyc03g007370.2 N 0.829
GSMUA_Achr7G24590_001 Musa acuminata GSMUA_Achr7G24590_001 N 0.826
Lus10014934.g Linum usitatissimum Lus10014934.g N 0.812
Bo7g097160 Brassica oleracea Bo7g097160 N 0.771
Bra009735 Brassica rapa Bra009735 N 0.771
PDK_20s1493901g001 Phoenix dactylifera PDK_20s1493901g001 N 0.727
OB05G35020 Oryza brachyantha OB05G35020 N 0.725
Si021904m.g Setaria italica Si021904m.g N 0.725
Pavir.J13718 Panicum virgatum Pavir.J13718 N 0.725
F775_08366 Aegilops tauschii F775_08366 N 0.710
MLOC_61094 Hordeum vulgare MLOC_61094 N 0.710
Sb09g030110 Sorghum bicolor Sb09g030110 N 0.710
Traes_1AL_0C41C44B1 Triticum aestivum Traes_1AL_0C41C44B1 N 0.710
TRIUR3_33378 Triticum urartu TRIUR3_33378 N 0.710