CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VDBG_04936
(
Verticillium albo atrum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
VDBG_04936
T326160_2.00
Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VDBG_04936T0
Sox
899
936
VLSKSSMWRAASAEERKPFEETPSRAKAAHALAVQEYN
Links
Other
Sox
family TFs
Other
Verticillium albo atrum
TFs
164 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
67303
Aureococcus anophagefferens
67303
N
0.441
AAEL000771
Aedes aegypti
AAEL000771
N
0.531
AALB009772
Anopheles albimanus
AALB009772
N
0.531
AALB009867
Anopheles albimanus
AALB009867
N
0.491
Aan_R006397
Calypte anna
Aan_R006397
N
0.417
AATE015714
Anopheles atroparvus
AATE015714
N
0.525
AATE016483
Anopheles atroparvus
AATE016483
N
0.472
ACEP25851
Atta cephalotes
ACEP25851
N
0.525
ACOM022799
Anopheles coluzzii
ACOM022799
N
0.484
ACOM026653
Anopheles coluzzii
ACOM026653
N
0.531
ACUA008827
Anopheles culicifacies
ACUA008827
N
0.468
ACUA010594
Anopheles culicifacies
ACUA010594
N
0.484
ACUA012732
Anopheles culicifacies
ACUA012732
N
0.531
ADIR005631
Anopheles dirus
ADIR005631
N
0.484
ADIR009661
Anopheles dirus
ADIR009661
N
0.525
AEPI003629
Anopheles epiroticus
AEPI003629
N
0.484
AEPI007652
Anopheles epiroticus
AEPI007652
N
0.465
AEPI007948
Anopheles epiroticus
AEPI007948
N
0.531
Afo_R011382
Aptenodytes forsteri
Afo_R011382
N
0.417
Afo_R012388
Aptenodytes forsteri
Afo_R012388
N
0.445
Afo_R012670
Aptenodytes forsteri
Afo_R012670
N
0.472
AFUN006689
Anopheles funestus
AFUN006689
N
0.465
AFUN009317
Anopheles funestus
AFUN009317
N
0.525
AFUN010198
Anopheles funestus
AFUN010198
N
0.484
AGAP028091
Anopheles gambiae
AGAP028091
N
0.525
ALUE_0000245701
Ascaris lumbricoides
ALUE_0000245701
N
0.484
ALUE_0000639901
Ascaris lumbricoides
ALUE_0000639901
N
0.487
AMAM004028
Anopheles maculatus
AMAM004028
N
0.465
AMAM023617
Anopheles maculatus
AMAM023617
N
0.525
AMEC007393
Anopheles melas
AMEC007393
N
0.465
AMEC011653
Anopheles melas
AMEC011653
N
0.531
AMEM002834
Anopheles merus
AMEM002834
N
0.531
AMEM007694
Anopheles merus
AMEM007694
N
0.466
AMIN001220
Anopheles minimus
AMIN001220
N
0.465
AMIN009302
Anopheles minimus
AMIN009302
N
0.484
ANCDUO_13942
Ancylostoma duodenale
ANCDUO_13942
N
0.447
AQUA001261
Anopheles quadriannulatus
AQUA001261
N
0.484
AQUA005880
Anopheles quadriannulatus
AQUA005880
N
0.531
ASIS001889
Anopheles sinensis
ASIS001889
N
0.513
ASTEI06131
Anopheles stephensi
ASTEI06131
N
0.531
ASTEI06408
Anopheles stephensi
ASTEI06408
N
0.484
BGIBMGA003081
Bombyx mori
BGIBMGA003081
N
0.484
BGLB010902
Biomphalaria glabrata
BGLB010902
N
0.441
Brh_R007868
Buceros rhinoceros
Brh_R007868
N
0.417
Cla016375
Citrullus lanatus
Cla016375
N
0.439
CLEC006960
Cimex lectularius
CLEC006960
N
0.484
CMQ_5875
Grosmannia clavigera
CMQ_5875
N
0.445
Cmyd_10006594
Chelonia mydas
Cmyd_10006594
N
0.445
CPIJ012041
Culex quinquefasciatus
CPIJ012041
N
0.484
CPIJ012498
Culex quinquefasciatus
CPIJ012498
N
0.506
CPIJ014017
Culex quinquefasciatus
CPIJ014017
N
0.438
CpipJ_CPIJ012041
Culex pipiens
CpipJ_CPIJ012041
N
0.484
CpipJ_CPIJ012498
Culex pipiens
CpipJ_CPIJ012498
N
0.506
CpipJ_CPIJ014017
Culex pipiens
CpipJ_CPIJ014017
N
0.438
DAPPUDRAFT_113704
Daphnia pulex
DAPPUDRAFT_113704
N
0.445
DAPPUDRAFT_259784
Daphnia pulex
DAPPUDRAFT_259784
N
0.431
DDB_G0287073
Dictyostelium discoideum
DDB_G0287073
N
0.449
DILT_0001419401
Diphyllobothrium latum
DILT_0001419401
N
0.425
ECPE_0001383301
Echinostoma caproni
ECPE_0001383301
N
0.461
EDI_065970
Entamoeba dispar
EDI_065970
N
0.416
EFA85451.1
Polysphondylium pallidum
EFA85451.1
N
0.449
ENSAMXG00000017231
Astyanax mexicanus
ENSAMXG00000017231
I
0.484
ENSAPLG00000003216
Anas platyrhynchos
ENSAPLG00000003216
N
0.445
ENSAPLG00000008530
Anas platyrhynchos
ENSAPLG00000008530
N
0.417
ENSAPLG00000010204
Anas platyrhynchos
ENSAPLG00000010204
N
0.491
ENSAPLG00000013168
Anas platyrhynchos
ENSAPLG00000013168
I
0.441
ENSBTAP00000027633-D1
Bos grunniens
ENSBTAP00000027633-D1
I
0.494
ENSCSAG00000016751
Chlorocebus sabaeus
ENSCSAG00000016751
N
0.484
ENSFALG00000011068
Ficedula albicollis
ENSFALG00000011068
N
0.417
ENSFCAG00000015685
Felis catus
ENSFCAG00000015685
I
0.441
ENSGALG00000023601
Gallus gallus
ENSGALG00000023601
N
0.417
ENSMGAG00000006336
Meleagris gallopavo
ENSMGAG00000006336
N
0.417
ENSMGAG00000006624
Meleagris gallopavo
ENSMGAG00000006624
N
0.491
ENSNLEG00000002693
Nomascus leucogenys
ENSNLEG00000002693
N
0.441
ENSOANG00000002448
Ornithorhynchus anatinus
ENSOANG00000002448
I
0.466
ENSOANG00000011188
Ornithorhynchus anatinus
ENSOANG00000011188
I
0.491
ENSP00000409273
Macaca fascicularis
ENSP00000409273
I
0.441
ENSPMAG00000004519
Petromyzon marinus
ENSPMAG00000004519
N
0.454
ENSSHAG00000008406
Sarcophilus harrisii
ENSSHAG00000008406
I
0.441
ENSTSYG00000001164
Tarsius syrichta
ENSTSYG00000001164
I
0.438
ENSTSYG00000006321
Tarsius syrichta
ENSTSYG00000006321
I
0.445
ENSTTRG00000015548
Tursiops truncatus
ENSTTRG00000015548
I
0.484
estExt_fgeneshDP_kg.C_1020010
Dictyostelium purpureum
estExt_fgeneshDP_kg.C_1020010
N
0.443
Gfo_R008143
Geospiza fortis
Gfo_R008143
N
0.417
GLOINDRAFT_271935
Rhizophagus irregularis
GLOINDRAFT_271935
N
0.478
GLOINDRAFT_335861
Rhizophagus irregularis
GLOINDRAFT_335861
N
0.450
GLOTRDRAFT_8101
Gloeophyllum trabeum
GLOTRDRAFT_8101
N
0.511
GLYMA20G01570
Glycine max
GLYMA20G01570
N
0.481
Gorai.005G106800
Gossypium raimondii
Gorai.005G106800
N
0.416
GPUH_0000499601
Gongylonema pulchrum
GPUH_0000499601
N
0.475
HelroG68905
Helobdella robusta
HelroG68905
N
0.447
HHAL000218-PA
Halyomorpha halys
HHAL000218-PA
N
0.438
HHAL001293-PA
Halyomorpha halys
HHAL001293-PA
N
0.525
HHAL001583-PA
Halyomorpha halys
HHAL001583-PA
N
0.473
HMEL013676
Heliconius melpomene
HMEL013676
N
0.445
Hmg20b
Mus musculus
ENSMUSG00000020232
D
0.441
HmN_000301900
Hymenolepis microstoma
HmN_000301900
N
0.443
Hsal_05005--XP_001122373.1_APIME
Harpegnathos saltator
Hsal_05005--XP_001122373.1_APIME
N
0.447
ISCW001638
Ixodes scapularis
ISCW001638
N
0.474
JL09_g5343
Pichia kudriavzevii
JL09_g5343
N
0.430
K443DRAFT_58201
Laccaria amethystina
K443DRAFT_58201
N
0.504
L798_00185
Zootermopsis nevadensis
L798_00185
N
0.487
L798_05432
Zootermopsis nevadensis
L798_05432
N
0.481
L798_12046
Zootermopsis nevadensis
L798_12046
N
0.484
L898_g4879
Steinernema monticolum
L898_g4879
N
0.438
LACBIDRAFT_169971
Laccaria bicolor
LACBIDRAFT_169971
N
0.504
LbrM.21.1660
Leishmania braziliensis
LbrM.21.1660
N
0.415
LDEC017494
Leptinotarsa decemlineata
LDEC017494
N
0.484
LDEC018263
Leptinotarsa decemlineata
LDEC018263
N
0.447
LotgiG143673
Lottia gigantea
LotgiG143673
N
0.441
M404DRAFT_787968
Pisolithus tinctorius
M404DRAFT_787968
N
0.468
M422DRAFT_54734
Sphaerobolus stellatus
M422DRAFT_54734
N
0.519
MESCA006364
Megaselia scalaris
MESCA006364
N
0.491
Minc18937
Meloidogyne incognita
Minc18937
N
0.441
MPER_06248
Moniliophthora perniciosa
MPER_06248
N
0.485
Myotis_brandtii_Hmgb2_10029741
Myotis brandtii
Myotis_brandtii_Hmgb2_10029741
N
0.454
Myotis_brandtii_TIMM8A_10019481
Myotis brandtii
Myotis_brandtii_TIMM8A_10019481
N
0.447
OESDEN_19415
Oesophagostomum dentatum
OESDEN_19415
N
0.447
Ogr00751
Ophisaurus gracilis
Ogr00751
I
0.445
Ogr11176
Ophisaurus gracilis
Ogr11176
N
0.494
Ogr13852
Ophisaurus gracilis
Ogr13852
N
0.454
PEQ_0000549401
Parascaris equorum
PEQ_0000549401
N
0.445
PHUM433280
Pediculus humanus
PHUM433280
N
0.522
PK00252.1
Cannabis sativa
PK00252.1
N
0.434
PLEOSDRAFT_1017219
Pleurotus ostreatus
PLEOSDRAFT_1017219
N
0.507
POSPLDRAFT_103238
Postia placenta
POSPLDRAFT_103238
N
0.442
PPA11045
Pristionchus pacificus
PPA11045
N
0.423
PPAI005428
Phlebotomus papatasi
PPAI005428
N
0.496
PredSwiss_ASS2010_3779.1
Pneumocystis carinii
PredSwiss_ASS2010_3779.1
N
0.485
PredSwiss_CON1835.1
Pneumocystis carinii
PredSwiss_CON1835.1
N
0.485
RPRC001038
Rhodnius prolixus
RPRC001038
N
0.463
SapurV1A.0237s0190
Salix purpurea
SapurV1A.0237s0190
N
0.506
SCLCIDRAFT_59496
Scleroderma citrinum
SCLCIDRAFT_59496
N
0.511
SINV16572
Solenopsis invicta
SINV16572
N
0.525
SINV19749
Solenopsis invicta
SINV19749
N
0.484
SMAR007058
Strigamia maritima
SMAR007058
N
0.438
SMAR010125
Strigamia maritima
SMAR010125
N
0.588
SOX10
Echinops telfairi
ENSETEG00000012633
I
0.438
Sox17
Mus musculus
ENSMUSG00000025902
D
0.484
SOX17
Sorex araneus
ENSSARG00000009573
I
0.484
SOX18
Dasypus novemcinctus
ENSDNOG00000036237
N
0.491
SOX18
Procavia capensis
ENSPCAG00000015663
N
0.491
SOX18
Pan troglodytes
ENSPTRG00000030459
I
0.484
SOX2
Felis catus
ENSFCAG00000029205
I
0.491
SOX2
Procavia capensis
ENSPCAG00000003690
I
0.491
SOX8
Callithrix jacchus
ENSCJAG00000002684
I
0.445
SOX8
Echinops telfairi
ENSETEG00000015470
N
0.445
SOX8
Felis catus
ENSFCAG00000004219
N
0.445
SOX8
Microcebus murinus
ENSMICG00000011516
I
0.445
SOX9
Echinops telfairi
ENSETEG00000020237
I
0.438
SOX9
Myotis lucifugus
ENSMLUG00000030312
I
0.441
SOX9
Tupaia belangeri
ENSTBEG00000000175
N
0.438
sox9a
Tetraodon nigroviridis
ENSTNIG00000001901
N
0.441
TC009856
Tribolium castaneum
TC009856
N
0.525
TcIL3000.10.440
Trypanosoma congolense
TcIL3000.10.440
N
0.450
TCNE_0000669501
Toxocara canis
TCNE_0000669501
N
0.454
TVAG_114290
Trichomonas vaginalis
TVAG_114290
N
0.484
TVAG_390840
Trichomonas vaginalis
TVAG_390840
N
0.487
UCREL1_237
Eutypa lata
UCREL1_237
N
0.424
VDBG_04936
Verticillium alfalfae
VDBG_04936
N
0.741
yakG000714
Bos grunniens
yakG000714
N
0.424
YQE_03817
Dendroctonus ponderosae
YQE_03817
N
0.445
YQE_08562
Dendroctonus ponderosae
YQE_08562
N
0.463
YQE_13041
Dendroctonus ponderosae
YQE_13041
N
0.582