CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra009681
(
Brassica rapa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Bra009681
T326698_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra009681.1-P
Sox
46
114
KKKPPTAFYFFMNDFRETYEEKNQYVNLKDVPKLGGEMWKSFTEDEKNVYRDKAAQLMEEYNKSLESND
Links
Other
Sox
family TFs
Other
Brassica rapa
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.0086s0060
Capsella grandiflora
Cagra.0086s0060
I
0.486
Carubv10001858m.g
Capsella rubella
Carubv10001858m.g
I
0.486
Bo9g014140
Brassica oleracea
Bo9g014140
I
0.476
Bra026498
Brassica rapa
Bra026498
I
0.476
Bostr.10199s0131
Boechera stricta
Bostr.10199s0131
N
0.459