CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CapteG191691
(
Capitella teleta
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
CapteG191691
T326825_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN
NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.449
0.478
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CapteP191691
Sox
148
216
PRAPATGYMLFAYKRRQEIKDIEPKLAFRDITKILGNEWSSMGTEEKQKYLSDAENDKKRYIDELDVYK
Links
Other
Sox
family TFs
Other
Capitella teleta
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TC011144
Tribolium castaneum
TC011144
N
0.509
Sakowv30005216m.g
Saccoglossus kowalevskii
Sakowv30005216m.g
I
0.498
ENSLACG00000010699
Latimeria chalumnae
ENSLACG00000010699
I
0.484
ENSLOCG00000010117
Lepisosteus oculatus
ENSLOCG00000010117
I
0.484
SMAR000790
Strigamia maritima
SMAR000790
I
0.484
LDEC010438
Leptinotarsa decemlineata
LDEC010438
I
0.474
HMG20B
Callithrix jacchus
ENSCJAG00000003488
I
0.471
ENSAMXG00000013048
Astyanax mexicanus
ENSAMXG00000013048
I
0.465
hmg20a
Gasterosteus aculeatus
ENSGACG00000003466
I
0.465
ENSGMOG00000015452
Gadus morhua
ENSGMOG00000015452
I
0.465
ENSLACG00000004599
Latimeria chalumnae
ENSLACG00000004599
I
0.465
ENSLOCG00000014255
Lepisosteus oculatus
ENSLOCG00000014255
I
0.465
ENSONIG00000012862
Oreochromis niloticus
ENSONIG00000012862
I
0.465
hmg20a
Oryzias latipes
ENSORLG00000001794
I
0.465
ENSPFOG00000014087
Poecilia formosa
ENSPFOG00000014087
I
0.465
hmg20a
Tetraodon nigroviridis
ENSTNIG00000008460
I
0.465
hmg20a
Takifugu rubripes
ENSTRUG00000016127
I
0.465
ENSXMAG00000000587
Xiphophorus maculatus
ENSXMAG00000000587
I
0.465
TriadG23407
Trichoplax adhaerens
TriadG23407
I
0.465
estExt_fgenesh2_pg.C_2300011
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300011
I
0.465
estExt_fgenesh2_pg.C_2300014
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300014
I
0.465
hmg20a
Xenopus tropicalis
XB-GENE-955353
I
0.465
hmg20a.L
Xenopus laevis
XB-GENE-955359
I
0.465
estExt_fgenesh2_pg.C_1350020
Branchiostoma floridae
estExt_fgenesh2_pg.C_1350020
I
0.462
estExt_fgenesh2_pg.C_4800003
Branchiostoma floridae
estExt_fgenesh2_pg.C_4800003
I
0.462
NEMVEDRAFT_v1g87244
Nematostella vectensis
NEMVEDRAFT_v1g87244
I
0.459
hmg20a
Danio rerio
ENSDARG00000031198
I
0.458
SPU_004776
Strongylocentrotus purpuratus
SPU_004776
I
0.452
SPU_018371
Strongylocentrotus purpuratus
SPU_018371
I
0.452
ENSAMEG00000005678
Ailuropoda melanoleuca
ENSAMEG00000005678
I
0.449
ENSAMEG00000010946
Ailuropoda melanoleuca
ENSAMEG00000010946
I
0.449
ENSAMXG00000017986
Astyanax mexicanus
ENSAMXG00000017986
I
0.449
ENSAPLG00000005528
Anas platyrhynchos
ENSAPLG00000005528
I
0.449
ENSBTAG00000047668
Bos taurus
ENSBTAG00000047668
I
0.449
HMG20B
Canis familiaris
ENSCAFG00000019215
I
0.449
HMG20B
Cavia porcellus
ENSCPOG00000010777
I
0.449
ENSCPOG00000020879
Cavia porcellus
ENSCPOG00000020879
I
0.449
ENSCSAG00000011140
Chlorocebus sabaeus
ENSCSAG00000011140
I
0.449
hmg20b
Danio rerio
ENSDARG00000042045
I
0.449
ENSFALG00000011609
Ficedula albicollis
ENSFALG00000011609
I
0.449
HMG20B
Felis catus
ENSFCAG00000026167
I
0.449
HMG20B
Homo sapiens
ENSG00000064961
I
0.449
HMG20B
Gallus gallus
ENSGALG00000027838
I
0.449
HMG20B
Gorilla gorilla
ENSGGOG00000014805
I
0.449
HMG20B
Loxodonta africana
ENSLAFG00000007845
I
0.449
ENSMEUG00000001270
Macropus eugenii
ENSMEUG00000001270
I
0.449
HMG20B
Meleagris gallopavo
ENSMGAG00000001362
I
0.449
HMG20B
Myotis lucifugus
ENSMLUG00000022392
I
0.449
HMG20B
Monodelphis domestica
ENSMODG00000006884
I
0.449
ENSMPUG00000003925
Mustela putorius furo
ENSMPUG00000003925
I
0.449
Hmg20b
Mus musculus
ENSMUSG00000020232
D
0.449
HMG20B
Ornithorhynchus anatinus
ENSOANG00000013515
I
0.449
ENSOARG00000005838
Ovis aries
ENSOARG00000005838
I
0.449
ENSOARG00000012318
Ovis aries
ENSOARG00000012318
I
0.449
HMG20B
Otolemur garnettii
ENSOGAG00000014171
I
0.449
ENSPANG00000010575
Papio anubis
ENSPANG00000010575
I
0.449
HMG20B
Procavia capensis
ENSPCAG00000010772
I
0.449
ENSPPYG00000009378
Pongo abelii
ENSPPYG00000009378
I
0.449
ENSPSIG00000010923
Pelodiscus sinensis
ENSPSIG00000010923
I
0.449
Hmg20b
Rattus norvegicus
ENSRNOG00000020601
I
0.449
ENSSHAG00000007226
Sarcophilus harrisii
ENSSHAG00000007226
I
0.449
ENSSTOG00000022314
Ictidomys tridecemlineatus
ENSSTOG00000022314
I
0.449
HMG20B
Taeniopygia guttata
ENSTGUG00000000169
I
0.449
HMG20B
Tursiops truncatus
ENSTTRG00000008832
I
0.449
Aan_R011684
Calypte anna
Aan_R011684
I
0.449
Afo_R007636
Aptenodytes forsteri
Afo_R007636
I
0.449
Alligator_sinensis_CCG000441.1
Alligator sinensis
Alligator_sinensis_CCG000441.1
I
0.449
Cmyd_10002377
Chelonia mydas
Cmyd_10002377
I
0.449
Gfo_R007604
Geospiza fortis
Gfo_R007604
I
0.449
Myotis_brandtii_HMG20B_10016321
Myotis brandtii
Myotis_brandtii_HMG20B_10016321
I
0.449
Pvit_08123
Pogona vitticeps
Pvit_08123
I
0.449
hmg20b.S
Xenopus laevis
XB-GENE-17338323
I
0.449
hmg20b
Xenopus tropicalis
XB-GENE-5809048
I
0.449
hmg20b.L
Xenopus laevis
XB-GENE-5809135
I
0.449
NEMVEDRAFT_v1g105457
Nematostella vectensis
NEMVEDRAFT_v1g105457
I
0.446
Sakowv30033800m.g
Saccoglossus kowalevskii
Sakowv30033800m.g
I
0.446
ENSDORG00000012598
Dipodomys ordii
ENSDORG00000012598
I
0.442
ENSGMOG00000011717
Gadus morhua
ENSGMOG00000011717
I
0.436
hmg20b
Gasterosteus aculeatus
ENSGACG00000012785
I
0.435
ENSONIG00000004838
Oreochromis niloticus
ENSONIG00000004838
I
0.435
hmg20b
Oryzias latipes
ENSORLG00000004640
I
0.435
ENSPFOG00000003017
Poecilia formosa
ENSPFOG00000003017
I
0.435
hmg20b
Tetraodon nigroviridis
ENSTNIG00000010630
I
0.435
eef2l2
Takifugu rubripes
ENSTRUG00000017921
I
0.435
ENSXMAG00000012647
Xiphophorus maculatus
ENSXMAG00000012647
I
0.435
YQE_10385
Dendroctonus ponderosae
YQE_10385
I
0.435
L798_15457
Zootermopsis nevadensis
L798_15457
I
0.430
CLEC002862
Cimex lectularius
CLEC002862
I
0.428
GB41600
Apis mellifera
GB41600
I
0.420
Hsal_13222--XP_625193.1_APIME
Harpegnathos saltator
Hsal_13222--XP_625193.1_APIME
I
0.420
HHAL010521-PA
Halyomorpha halys
HHAL010521-PA
I
0.420
NV11068
Nasonia vitripennis
NV11068
I
0.418
CGI_10028818
Crassostrea gigas
CGI_10028818
I
0.416