CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CPC735_033930
(
Coccidioides posadasii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
CPC735_033930
T327171_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.613
0.536
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.494
0.362
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.494
0.362
mat1-Mc
M11340_2.00
Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN
Transfac
Matys et al.(2006)
F$MAT1MC_01
0.492
0.333
mat1-Mc
M11341_2.00
Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR
Transfac
Matys et al.(2006)
F$MAT1MC_02
0.492
0.333
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EER28057
Sox
204
272
IARPMNSFMLYRSAYAERTKEWCAQNNHQVVSRASGQSWPLEPKEIRDLYEGYATIERDNHQKAHPDYK
Links
Other
Sox
family TFs
Other
Coccidioides posadasii
TFs
298 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CGI_10022161
Crassostrea gigas
CGI_10022161
N
HelroG126586
Helobdella robusta
HelroG126586
N
HelroG72974
Helobdella robusta
HelroG72974
N
LotgiG113393
Lottia gigantea
LotgiG113393
N
Ocbimv22000807m.g
Octopus bimaculoides
Ocbimv22000807m.g
N
SMU15030006
Schmidtea mediterranea
SMU15030006
N
SMU15031043
Schmidtea mediterranea
SMU15031043
N