CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAMXG00000003325
(
Astyanax mexicanus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSAMXG00000003325
T327547_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMXP00000003399
Sox
437
489
LNHLHSEPAAHFSSVLKDACSRWKSMSNQEKQPYYEEQARLSRQHLERYPDYK
Links
Other
Sox
family TFs
Other
Astyanax mexicanus
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28838.m000246
Ricinus communis
28838.m000246
I
29813.m001506
Ricinus communis
29813.m001506
I
30000.m000380
Ricinus communis
30000.m000380
I
30137.m000436
Ricinus communis
30137.m000436
I
AMTR_s00010p00264600
Amborella trichopoda
AMTR_s00010p00264600
I
AMTR_s00024p00137930
Amborella trichopoda
AMTR_s00024p00137930
I
AMTR_s00119p00105590
Amborella trichopoda
AMTR_s00119p00105590
I
AMTR_s00186p00015620
Amborella trichopoda
AMTR_s00186p00015620
I
Aquca_002_00639
Aquilegia coerulea
Aquca_002_00639
I
Aquca_002_01251
Aquilegia coerulea
Aquca_002_01251
I
Aquca_022_00293
Aquilegia coerulea
Aquca_022_00293
I
ATMYB52
Vitis vinifera
VIT_17s0000g01890
I
ATMYB54
Arabidopsis lyrata
Al_scaffold_0002_2037
I
ATMYB54
Arabidopsis thaliana
AT1G73410
I
AtMYB56
Arabidopsis lyrata
fgenesh2_kg.6__1780__AT5G17800.1
I
ATMYB69
Vitis vinifera
VIT_04s0044g01380
I
BGIOSGA001907
Oryza indica
BGIOSGA001907
I
BGIOSGA028724
Oryza indica
BGIOSGA028724
I
Bo2g080540
Brassica oleracea
Bo2g080540
I
Bo6g116800
Brassica oleracea
Bo6g116800
I
Bostr.10273s0016
Boechera stricta
Bostr.10273s0016
I
Bostr.26527s0427
Boechera stricta
Bostr.26527s0427
I
Bra008096
Brassica rapa
Bra008096
I
Bra015992
Brassica rapa
Bra015992
I
BRADI3G36740
Brachypodium distachyon
BRADI3G36740
I
BRADI4G22730
Brachypodium distachyon
BRADI4G22730
I
Cagra.4894s0009
Capsella grandiflora
Cagra.4894s0009
I
Cagra.6254s0026
Capsella grandiflora
Cagra.6254s0026
I
Carubv10001376m.g
Capsella rubella
Carubv10001376m.g
I
Carubv10021434m.g
Capsella rubella
Carubv10021434m.g
I
cassava12017.valid.m1
Manihot esculenta
cassava12017.valid.m1
I
cassava12378.valid.m1
Manihot esculenta
cassava12378.valid.m1
I
cassava17309.m1
Manihot esculenta
cassava17309.m1
I
cassava25953.m1
Manihot esculenta
cassava25953.m1
I
cassava26779.m1
Manihot esculenta
cassava26779.m1
I
cassava5849.m1
Manihot esculenta
cassava5849.m1
I
cassava9262.m1
Manihot esculenta
cassava9262.m1
I
Ca_08179
Cicer arietinum
Ca_08179
I
Ca_16374
Cicer arietinum
Ca_16374
I
chr2.CM0641.440.nd
Lotus japonicus
chr2.CM0641.440.nd
I
Ciclev10011967m.g
Citrus clementina
Ciclev10011967m.g
I
Ciclev10020631m.g
Citrus clementina
Ciclev10020631m.g
I
Ciclev10021859m.g
Citrus clementina
Ciclev10021859m.g
I
Ciclev10031944m.g
Citrus clementina
Ciclev10031944m.g
I
Cla000326
Citrullus lanatus
Cla000326
I
Cla010359
Citrullus lanatus
Cla010359
I
Cla017770
Citrullus lanatus
Cla017770
I
Cla018940
Citrullus lanatus
Cla018940
I
Cucsa.016540
Cucumis sativus
Cucsa.016540
I
Cucsa.112050
Cucumis sativus
Cucsa.112050
I
Cucsa.189540
Cucumis sativus
Cucsa.189540
I
Cucsa.284980
Cucumis sativus
Cucsa.284980
I
Cucsa.337000
Cucumis sativus
Cucsa.337000
I
Eucgr.A02150
Eucalyptus grandis
Eucgr.A02150
I
Eucgr.G02492
Eucalyptus grandis
Eucgr.G02492
I
evm.TU.supercontig_1.43
Carica papaya
evm.TU.supercontig_1.43
I
evm.TU.supercontig_7.125
Carica papaya
evm.TU.supercontig_7.125
I
evm.TU.supercontig_73.4
Carica papaya
evm.TU.supercontig_73.4
I
e_gw1.219.38.1
Physcomitrella patens
e_gw1.219.38.1
I
e_gw1.39.24.1
Physcomitrella patens
e_gw1.39.24.1
I
e_gw1.91.11.1
Physcomitrella patens
e_gw1.91.11.1
I
gene09311-v1.0-hybrid
Fragaria vesca
gene09311-v1.0-hybrid
I
gene29254-v1.0-hybrid
Fragaria vesca
gene29254-v1.0-hybrid
I
GLYMA01G05980
Glycine max
GLYMA01G05980
I
GLYMA02G12105
Glycine max
GLYMA02G12105
I
GLYMA03G00980
Glycine max
GLYMA03G00980
I
GLYMA04G42110
Glycine max
GLYMA04G42110
I
GLYMA06G12691
Glycine max
GLYMA06G12691
I
GLYMA07G35581
Glycine max
GLYMA07G35581
I
GLYMA09G29940
Glycine max
GLYMA09G29940
I
GLYMA16G34490
Glycine max
GLYMA16G34490
I
GLYMA19G29670
Glycine max
GLYMA19G29670
I
GLYMA20G04511
Glycine max
GLYMA20G04511
I
Gorai.005G142000
Gossypium raimondii
Gorai.005G142000
I
Gorai.006G015200
Gossypium raimondii
Gorai.006G015200
I
Gorai.007G346400
Gossypium raimondii
Gorai.007G346400
I
Gorai.008G293100
Gossypium raimondii
Gorai.008G293100
I
Gorai.013G086400
Gossypium raimondii
Gorai.013G086400
I
GRMZM2G312419
Zea mays
GRMZM2G312419
I
GRMZM2G428555
Zea mays
GRMZM2G428555
I
GRMZM5G803355
Zea mays
GRMZM5G803355
I
GSMUA_Achr10G05080_001
Musa acuminata
GSMUA_Achr10G05080_001
I
GSMUA_Achr10G10800_001
Musa acuminata
GSMUA_Achr10G10800_001
I
GSMUA_Achr10G12830_001
Musa acuminata
GSMUA_Achr10G12830_001
I
GSMUA_Achr3G09490_001
Musa acuminata
GSMUA_Achr3G09490_001
I
GSMUA_Achr3G16490_001
Musa acuminata
GSMUA_Achr3G16490_001
I
GSMUA_Achr5G27750_001
Musa acuminata
GSMUA_Achr5G27750_001
I
GSMUA_Achr6G02580_001
Musa acuminata
GSMUA_Achr6G02580_001
I
GSMUA_Achr6G17630_001
Musa acuminata
GSMUA_Achr6G17630_001
I
GSMUA_Achr6G32250_001
Musa acuminata
GSMUA_Achr6G32250_001
I
GSMUA_Achr7G18390_001
Musa acuminata
GSMUA_Achr7G18390_001
I
GSMUA_Achr9G04990_001
Musa acuminata
GSMUA_Achr9G04990_001
I
GSMUA_Achr9G08480_001
Musa acuminata
GSMUA_Achr9G08480_001
I
GSMUA_Achr9G29090_001
Musa acuminata
GSMUA_Achr9G29090_001
I
gw1.2.29.1
Physcomitrella patens
gw1.2.29.1
I
gw1.200.30.1
Physcomitrella patens
gw1.200.30.1
I
gw1.74.13.1
Physcomitrella patens
gw1.74.13.1
I
gw1.76.8.1
Physcomitrella patens
gw1.76.8.1
I
LjSGA_013423.1
Lotus japonicus
LjSGA_013423.1
I
LPERR01G10360
Leersia perrieri
LPERR01G10360
I
LPERR08G13020
Leersia perrieri
LPERR08G13020
I
LPERR11G05690
Leersia perrieri
LPERR11G05690
I
Lus10018936.g
Linum usitatissimum
Lus10018936.g
I
Lus10026611.g
Linum usitatissimum
Lus10026611.g
I
Lus10028638.g
Linum usitatissimum
Lus10028638.g
I
Lus10029746.g
Linum usitatissimum
Lus10029746.g
I
Lus10030452.g
Linum usitatissimum
Lus10030452.g
I
MDP0000136541
Malus domestica
MDP0000136541
I
MDP0000146675
Malus domestica
MDP0000146675
I
MDP0000172476
Malus domestica
MDP0000172476
I
MDP0000265114
Malus domestica
MDP0000265114
I
MDP0000755899
Malus domestica
MDP0000755899
I
MDP0000878006
Malus domestica
MDP0000878006
I
mgf001214m
Mimulus guttatus
mgf001214m
I
mgf006675m
Mimulus guttatus
mgf006675m
I
mgf018311m
Mimulus guttatus
mgf018311m
I
MLOC_13062
Hordeum vulgare
MLOC_13062
I
MLOC_3926
Hordeum vulgare
MLOC_3926
I
MTR_4g082040
Medicago truncatula
MTR_4g082040
I
MTR_5g041570
Medicago truncatula
MTR_5g041570
I
MTR_6g074860
Medicago truncatula
MTR_6g074860
I
MTR_7g086960
Medicago truncatula
MTR_7g086960
I
OB08G23250
Oryza brachyantha
OB08G23250
I
OBART08G15790
Oryza barthii
OBART08G15790
I
OGLUM01G12520
Oryza glumaepatula
OGLUM01G12520
I
OGLUM08G16550
Oryza glumaepatula
OGLUM08G16550
I
OGLUM11G05960
Oryza glumaepatula
OGLUM11G05960
I
OMERI01G10960
Oryza meridionalis
OMERI01G10960
I
OMERI08G13100
Oryza meridionalis
OMERI08G13100
I
OMERI11G05160
Oryza meridionalis
OMERI11G05160
I
ONIVA01G13400
Oryza nivara
ONIVA01G13400
I
ONIVA08G17040
Oryza nivara
ONIVA08G17040
I
ONIVA11G06220
Oryza nivara
ONIVA11G06220
I
OPUNC01G10870
Oryza punctata
OPUNC01G10870
I
OPUNC08G13850
Oryza punctata
OPUNC08G13850
I
OPUNC11G06210
Oryza punctata
OPUNC11G06210
I
orange1.1g025697m.g
Citrus sinensis
orange1.1g025697m.g
I
orange1.1g046309m.g
Citrus sinensis
orange1.1g046309m.g
I
orange1.1g047550m.g
Citrus sinensis
orange1.1g047550m.g
I
ORGLA08G0138700
Oryza glaberrima
ORGLA08G0138700
I
ORGLA11G0056700
Oryza glaberrima
ORGLA11G0056700
I
ORUFI01G12050
Oryza rufipogon
ORUFI01G12050
I
ORUFI08G17710
Oryza rufipogon
ORUFI08G17710
I
ORUFI11G06340
Oryza rufipogon
ORUFI11G06340
I
OS01G0274800
Oryza sativa
OS01G0274800
I
OS08G0435700
Oryza sativa
OS08G0435700
I
OS11G0207600
Oryza sativa
OS11G0207600
I
Pavir.Cb01957
Panicum virgatum
Pavir.Cb01957
I
Pavir.Ea01097
Panicum virgatum
Pavir.Ea01097
I
Pavir.Fa00885
Panicum virgatum
Pavir.Fa00885
I
Pavir.Fb01599
Panicum virgatum
Pavir.Fb01599
I
Pavir.Hb01200
Panicum virgatum
Pavir.Hb01200
I
Pavir.J04678
Panicum virgatum
Pavir.J04678
I
Pavir.J16832
Panicum virgatum
Pavir.J16832
I
Pavir.J21755
Panicum virgatum
Pavir.J21755
I
PDK_20s1366461g001
Phoenix dactylifera
PDK_20s1366461g001
I
PDK_20s1403571g003
Phoenix dactylifera
PDK_20s1403571g003
I
PGSC0003DMG400018427
Solanum tuberosum
PGSC0003DMG400018427
I
PGSC0003DMG400024822
Solanum tuberosum
PGSC0003DMG400024822
I
PGSC0003DMG400028119
Solanum tuberosum
PGSC0003DMG400028119
I
PGSC0003DMG400031044
Solanum tuberosum
PGSC0003DMG400031044
I
PK17670.1
Cannabis sativa
PK17670.1
I
PK20989.1
Cannabis sativa
PK20989.1
I
PK28773.1
Cannabis sativa
PK28773.1
I
Pm006483
Prunus mume
Pm006483
I
Pm025457
Prunus mume
Pm025457
I
POPTR_0005s06410
Populus trichocarpa
POPTR_0005s06410
I
POPTR_0007s04140
Populus trichocarpa
POPTR_0007s04140
I
POPTR_0008s08760
Populus trichocarpa
POPTR_0008s08760
I
POPTR_0010s17470
Populus trichocarpa
POPTR_0010s17470
I
POPTR_0012s03650
Populus trichocarpa
POPTR_0012s03650
I
POPTR_0013s06320
Populus trichocarpa
POPTR_0013s06320
I
POPTR_0015s05130
Populus trichocarpa
POPTR_0015s05130
I
POPTR_0017s12140
Populus trichocarpa
POPTR_0017s12140
I
POPTR_0019s05740
Populus trichocarpa
POPTR_0019s05740
I
PRUPE_ppa006434mg
Prunus persica
PRUPE_ppa006434mg
I
PRUPE_ppa021779mg
Prunus persica
PRUPE_ppa021779mg
I
PRUPE_ppa025260mg
Prunus persica
PRUPE_ppa025260mg
I
SapurV1A.0074s0390
Salix purpurea
SapurV1A.0074s0390
I
SapurV1A.0149s0020
Salix purpurea
SapurV1A.0149s0020
I
SapurV1A.0171s0440
Salix purpurea
SapurV1A.0171s0440
I
SapurV1A.0458s0070
Salix purpurea
SapurV1A.0458s0070
I
SapurV1A.1416s0010
Salix purpurea
SapurV1A.1416s0010
I
SapurV1A.1601s0030
Salix purpurea
SapurV1A.1601s0030
I
SapurV1A.1660s0020
Salix purpurea
SapurV1A.1660s0020
I
SapurV1A.1664s0020
Salix purpurea
SapurV1A.1664s0020
I
SapurV1A.3733s0010
Salix purpurea
SapurV1A.3733s0010
I
Sb03g010960
Sorghum bicolor
Sb03g010960
I
Sb03g010970
Sorghum bicolor
Sb03g010970
I
Sb05g009460
Sorghum bicolor
Sb05g009460
I
Sb07g021280
Sorghum bicolor
Sb07g021280
I
Sb08g005290
Sorghum bicolor
Sb08g005290
I
SELMODRAFT_127613
Selaginella moellendorffii
SELMODRAFT_127613
I
SELMODRAFT_38644
Selaginella moellendorffii
SELMODRAFT_38644
I
SELMODRAFT_6091
Selaginella moellendorffii
SELMODRAFT_6091
I
SELMODRAFT_6100
Selaginella moellendorffii
SELMODRAFT_6100
I
SELMODRAFT_6282
Selaginella moellendorffii
SELMODRAFT_6282
I
SELMODRAFT_6284
Selaginella moellendorffii
SELMODRAFT_6284
I
SELMODRAFT_80553
Selaginella moellendorffii
SELMODRAFT_80553
I
SELMODRAFT_8484
Selaginella moellendorffii
SELMODRAFT_8484
I
Si004691m.g
Setaria italica
Si004691m.g
I
Si005038m.g
Setaria italica
Si005038m.g
I
Si011791m.g
Setaria italica
Si011791m.g
I
Si026751m.g
Setaria italica
Si026751m.g
I
Solyc04g064540.2
Solanum lycopersicum
Solyc04g064540.2
I
Solyc05g007870.1
Solanum lycopersicum
Solyc05g007870.1
I
Solyc10g081320.1
Solanum lycopersicum
Solyc10g081320.1
I
TCM_011689
Theobroma cacao
TCM_011689
I
TCM_013357
Theobroma cacao
TCM_013357
I
TCM_033560
Theobroma cacao
TCM_033560
I
Thhalv10014113m.g
Eutrema salsugineum
Thhalv10014113m.g
I
Thhalv10019669m.g
Eutrema salsugineum
Thhalv10019669m.g
I
TRAES3BF142600060CFD_g
Triticum aestivum
TRAES3BF142600060CFD_g
I
Traes_4AL_7A841CAD2
Triticum aestivum
Traes_4AL_7A841CAD2
I
Traes_4BS_189002AB8
Triticum aestivum
Traes_4BS_189002AB8
I
Traes_4DS_F6E1A4F88
Triticum aestivum
Traes_4DS_F6E1A4F88
I
TRIUR3_29043
Triticum urartu
TRIUR3_29043
I
TRIUR3_35269
Triticum urartu
TRIUR3_35269
I
VIT_01s0026g02600
Vitis vinifera
VIT_01s0026g02600
I
VIT_14s0108g01010
Vitis vinifera
VIT_14s0108g01010
I