CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCING00000018888
(
Ciona intestinalis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSCING00000018888
T327700_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCINP00000032230
Sox
39
107
PKKPLSGYVRFMNSRRDQVLQENRSLSFADITKLLGEEWTNMSLSEKSIYLDIAEKEKEKYWKEVEAYQ
Links
Other
Sox
family TFs
Other
Ciona intestinalis
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSCSAVG00000001086
Ciona savignyi
ENSCSAVG00000001086
N
0.652
RO3G_16060
Rhizopus oryzae
RO3G_16060
I
0.488
LotgiG196090
Lottia gigantea
LotgiG196090
I
0.485
Ocbimv22031259m.g
Octopus bimaculoides
Ocbimv22031259m.g
I
0.483
SPU_004776
Strongylocentrotus purpuratus
SPU_004776
I
0.475
SPU_018371
Strongylocentrotus purpuratus
SPU_018371
I
0.475
ACYPI34316
Acyrthosiphon pisum
ACYPI34316
N
0.474
RO3G_15755
Rhizopus oryzae
RO3G_15755
I
0.461
ACYPI002322
Acyrthosiphon pisum
ACYPI002322
I
0.461
MVLG_01270
Microbotryum violaceum
MVLG_01270
I
0.459
fgeneshMC_pg.3_#_1190
Mucor circinelloides
fgeneshMC_pg.3_#_1190
I
0.458
estExt_fgenesh2_pg.C_2300011
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300011
I
0.455
estExt_fgenesh2_pg.C_2300014
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300014
I
0.455
Sakowv30033800m.g
Saccoglossus kowalevskii
Sakowv30033800m.g
I
0.453
NEMVEDRAFT_v1g105457
Nematostella vectensis
NEMVEDRAFT_v1g105457
I
0.451
gw1.72.30.1
Phycomyces blakesleeanus
gw1.72.30.1
I
0.445
GB41600
Apis mellifera
GB41600
I
0.438
GSTUM_00011974001
Tuber melanosporum
GSTUM_00011974001
I
0.437
TriadG23407
Trichoplax adhaerens
TriadG23407
I
0.436
GK17179
Drosophila willistoni
FBgn0219178
N
0.432
SAPIO_CDS3355
Scedosporium apiospermum
SAPIO_CDS3355
I
0.431
RO3G_07013
Rhizopus oryzae
RO3G_07013
I
0.427
ENSLACG00000004599
Latimeria chalumnae
ENSLACG00000004599
I
0.427
estExt_fgeneshMC_pg.C_20910
Mucor circinelloides
estExt_fgeneshMC_pg.C_20910
I
0.427
CapteG155070
Capitella teleta
CapteG155070
I
0.426
LCUP006200
Lucilia cuprina
LCUP006200
N
0.425
ACYPI001201
Acyrthosiphon pisum
ACYPI001201
N
0.424
PHUM514030
Pediculus humanus
PHUM514030
N
0.420
MESCA003479
Megaselia scalaris
MESCA003479
N
0.419
ENSAMXG00000013048
Astyanax mexicanus
ENSAMXG00000013048
I
0.418
hmg20a
Gasterosteus aculeatus
ENSGACG00000003466
I
0.418
ENSLOCG00000014255
Lepisosteus oculatus
ENSLOCG00000014255
I
0.418
ENSONIG00000012862
Oreochromis niloticus
ENSONIG00000012862
I
0.418
hmg20a
Oryzias latipes
ENSORLG00000001794
I
0.418
ENSPFOG00000014087
Poecilia formosa
ENSPFOG00000014087
I
0.418
hmg20a
Tetraodon nigroviridis
ENSTNIG00000008460
I
0.418
hmg20a
Takifugu rubripes
ENSTRUG00000016127
I
0.418
ENSXMAG00000000587
Xiphophorus maculatus
ENSXMAG00000000587
I
0.418
YQE_04289
Dendroctonus ponderosae
YQE_04289
N
0.416
ENSAMEG00000008348
Ailuropoda melanoleuca
ENSAMEG00000008348
I
0.415
HMG20A
Bos taurus
ENSBTAG00000020441
I
0.415
HMG20A
Canis familiaris
ENSCAFG00000018061
I
0.415
HMG20A
Choloepus hoffmanni
ENSCHOG00000012116
I
0.415
HMG20A
Callithrix jacchus
ENSCJAG00000011131
I
0.415
HMG20A
Cavia porcellus
ENSCPOG00000011704
I
0.415
ENSCSAG00000014734
Chlorocebus sabaeus
ENSCSAG00000014734
I
0.415
HMG20A
Dasypus novemcinctus
ENSDNOG00000034143
I
0.415
Hmg20a
Dipodomys ordii
ENSDORG00000000623
I
0.415
HMG20A
Erinaceus europaeus
ENSEEUG00000004472
I
0.415
HMG20A
Echinops telfairi
ENSETEG00000015812
I
0.415
HMG20A
Felis catus
ENSFCAG00000022539
I
0.415
HMG20A
Homo sapiens
ENSG00000140382
I
0.415
HMG20A
Gorilla gorilla
ENSGGOG00000008439
I
0.415
HMG20A
Loxodonta africana
ENSLAFG00000018273
I
0.415
ENSMEUG00000016429
Macropus eugenii
ENSMEUG00000016429
I
0.415
HMG20A
Microcebus murinus
ENSMICG00000011025
I
0.415
HMG20A
Myotis lucifugus
ENSMLUG00000011648
I
0.415
HMG20A
Macaca mulatta
ENSMMUG00000007430
I
0.415
HMG20A
Monodelphis domestica
ENSMODG00000012113
I
0.415
ENSMPUG00000017330
Mustela putorius furo
ENSMPUG00000017330
I
0.415
Hmg20a
Mus musculus
ENSMUSG00000032329
I
0.415
ENSNLEG00000008357
Nomascus leucogenys
ENSNLEG00000008357
I
0.415
HMG20A
Ornithorhynchus anatinus
ENSOANG00000009993
I
0.415
ENSOARG00000001765
Ovis aries
ENSOARG00000001765
I
0.415
HMG20A
Oryctolagus cuniculus
ENSOCUG00000005648
I
0.415
HMG20A
Otolemur garnettii
ENSOGAG00000006630
I
0.415
ENSPANG00000015844
Papio anubis
ENSPANG00000015844
I
0.415
HMG20A
Procavia capensis
ENSPCAG00000013879
I
0.415
ENSPPYG00000006683
Pongo abelii
ENSPPYG00000006683
I
0.415
HMG20A
Pan troglodytes
ENSPTRG00000007326
I
0.415
Hmg20a
Rattus norvegicus
ENSRNOG00000016905
I
0.415
HMG20A
Sorex araneus
ENSSARG00000012609
I
0.415
ENSSHAG00000012311
Sarcophilus harrisii
ENSSHAG00000012311
I
0.415
HMG20A
Sus scrofa
ENSSSCG00000001871
I
0.415
ENSSSCG00000024002
Sus scrofa
ENSSSCG00000024002
I
0.415
ENSSTOG00000013818
Ictidomys tridecemlineatus
ENSSTOG00000013818
I
0.415
HMG20A
Tupaia belangeri
ENSTBEG00000015283
I
0.415
ENSTSYG00000003485
Tarsius syrichta
ENSTSYG00000003485
I
0.415
HMG20A
Tursiops truncatus
ENSTTRG00000006500
I
0.415
HMG20A
Vicugna pacos
ENSVPAG00000010013
I
0.415
ENSP00000336856-D1
Bos grunniens
ENSP00000336856-D1
I
0.415
ENSP00000371133
Macaca fascicularis
ENSP00000371133
I
0.415
Myotis_brandtii_HMG20A_10005450
Myotis brandtii
Myotis_brandtii_HMG20A_10005450
I
0.415