ubtfl (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000038780 T327855_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000056633 Sox 114 182
ENSDARP00000056633 Sox 198 266
ENSDARP00000056633 Sox 298 361
ENSDARP00000056633 Sox 463 502
ENSDARP00000056633 Sox 525 592
ENSDARP00000116387 Sox 114 155
ENSDARP00000120239 Sox 9 56
ENSDARP00000121572 Sox 1 25
ENSDARP00000121572 Sox 43 110
ENSDARP00000123462 Sox 114 182
ENSDARP00000123462 Sox 198 266
ENSDARP00000123462 Sox 298 361
ENSDARP00000123462 Sox 465 501
ENSDARP00000123462 Sox 519 586

Links

Other Sox family TFs
Other Danio rerio TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSONIG00000014037 Oreochromis niloticus ENSONIG00000014037 N 0.718
ENSMGAG00000005096 Meleagris gallopavo ENSMGAG00000005096 N 0.692
ENSXMAG00000012822 Xiphophorus maculatus ENSXMAG00000012822 N 0.689
ENSGALG00000027670 Gallus gallus ENSGALG00000027670 N 0.686
ubtfl Gasterosteus aculeatus ENSGACG00000001504 N 0.680
ubtfl Takifugu rubripes ENSTRUG00000009527 N 0.657
ENSGMOG00000009475 Gadus morhua ENSGMOG00000009475 N 0.656
ubtfl Tetraodon nigroviridis ENSTNIG00000003066 N 0.655
CaO19.400 Candida albicans CaO19.400 N 0.570
CaO19.8030 Candida albicans CaO19.8030 N 0.570
1715211A Xenopus laevis 1715211A N 0.556
ENSLACG00000008118 Latimeria chalumnae ENSLACG00000008118 N 0.553
ubtf.L Xenopus laevis XB-GENE-6254049 N 0.547
ENSLOCG00000010224 Lepisosteus oculatus ENSLOCG00000010224 N 0.529
TCNE_0000669501 Toxocara canis TCNE_0000669501 N 0.485
yakG000714 Bos grunniens yakG000714 N 0.451
fgeneshHS_pg.scaffold_50000080 Naegleria gruberi fgeneshHS_pg.scaffold_50000080 N 0.436
GPLIN_000530400 Globodera pallida GPLIN_000530400 N 0.431
ENSPFOG00000010734 Poecilia formosa ENSPFOG00000010734 N 0.429
fgenesh1_pg.6__126 Bigelowiella natans fgenesh1_pg.6__126 N 0.427
GNLVRS01_PISO0F12105g Millerozyma farinosa GNLVRS01_PISO0F12105g N 0.425
GNLVRS01_PISO0E10740g Millerozyma farinosa GNLVRS01_PISO0E10740g N 0.417
ASIM_0000075001 Anisakis simplex ASIM_0000075001 N 0.417
36550 Aureococcus anophagefferens 36550 N 0.415