LOC108349258 (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000047496 T329062_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000053460 Sox 9 79
ENSRNOP00000053460 Sox 93 161

Links

Other Sox family TFs
Other Rattus norvegicus TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGD1566225 Rattus norvegicus ENSRNOG00000055742 N 0.723
RGD1560585 Rattus norvegicus ENSRNOG00000060534 N 0.718
LOC103694516 Rattus norvegicus ENSRNOG00000049646 N 0.704
RGD1561558 Rattus norvegicus ENSRNOG00000053609 N 0.704
LOC103694517 Rattus norvegicus ENSRNOG00000052269 N 0.702
LOC681067 Rattus norvegicus ENSRNOG00000057013 N 0.701
LOC691030 Rattus norvegicus ENSRNOG00000057926 N 0.688
AABR07030543.1 Rattus norvegicus ENSRNOG00000051634 N 0.648
AABR07045786.1 Rattus norvegicus ENSRNOG00000055923 N 0.648
AC127605.1 Rattus norvegicus ENSRNOG00000033156 N 0.571
AABR07041586.2 Rattus norvegicus ENSRNOG00000052769 N 0.542
AABR07040480.1 Rattus norvegicus ENSRNOG00000057407 N 0.492
AABR07040430.1 Rattus norvegicus ENSRNOG00000056486 N 0.489
ECANG7_07075 Echinococcus canadensis ECANG7_07075 N 0.462
EmuJ_000941400 Echinococcus multilocularis EmuJ_000941400 N 0.462
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N 0.462
TASK_0000795701 Taenia asiatica TASK_0000795701 N 0.462
TsM_000746700 Taenia solium TsM_000746700 N 0.462
HmN_000761000 Hymenolepis microstoma HmN_000761000 N 0.450
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.448
TTAC_0000939701 Hydatigera taeniaeformis TTAC_0000939701 N 0.443
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.438
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.437
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.437
AAC59859 Xenopus laevis AAC59859 N 0.435
AAH73449 Xenopus laevis AAH73449 N 0.435
HNAJ_0000227501 Hymenolepis nana HNAJ_0000227501 N 0.431
T265_10726 Opisthorchis viverrini T265_10726 N 0.430
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.427
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N 0.427
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.424
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.424
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.424
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.424
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.424
HMGB1 Bos taurus ENSBTAG00000014862 N 0.422
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.422
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.422
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.422
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.422
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.422
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.422
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.422
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.422
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.422
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.422
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.422
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.422
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.422
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.422
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.422
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.422
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.422
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.419
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.419
AAH44009 Xenopus laevis AAH44009 N 0.419
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.418
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.418
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.418
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.418
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.418
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.418
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.418
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.418
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.418
A_00070 Schistosoma haematobium A_00070 N 0.418
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N 0.418
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N 0.418
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N 0.418
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.416
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.415
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.415
csin112095 Clonorchis sinensis csin112095 N 0.415