LOC681067 (Rattus norvegicus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSRNOG00000057013 T329081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000069361 Sox 9 79
ENSRNOP00000069361 Sox 93 161

Links

Other Sox family TFs
Other Rattus norvegicus TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LOC103694517 Rattus norvegicus ENSRNOG00000052269 N 0.730
LOC103694516 Rattus norvegicus ENSRNOG00000049646 N 0.728
RGD1561558 Rattus norvegicus ENSRNOG00000053609 N 0.728
LOC691030 Rattus norvegicus ENSRNOG00000057926 N 0.722
RGD1566225 Rattus norvegicus ENSRNOG00000055742 N 0.720
RGD1560585 Rattus norvegicus ENSRNOG00000060534 N 0.714
LOC108349258 Rattus norvegicus ENSRNOG00000047496 N 0.701
AABR07030543.1 Rattus norvegicus ENSRNOG00000051634 N 0.682
AABR07045786.1 Rattus norvegicus ENSRNOG00000055923 N 0.682
AC127605.1 Rattus norvegicus ENSRNOG00000033156 N 0.548
AABR07041586.2 Rattus norvegicus ENSRNOG00000052769 N 0.514
AABR07040480.1 Rattus norvegicus ENSRNOG00000057407 N 0.490
AABR07040430.1 Rattus norvegicus ENSRNOG00000056486 N 0.458
HmN_000761000 Hymenolepis microstoma HmN_000761000 N 0.457
ENSOARG00000011611 Ovis aries ENSOARG00000011611 N 0.454
AAC59859 Xenopus laevis AAC59859 N 0.454
AAH73449 Xenopus laevis AAH73449 N 0.454
ECANG7_07075 Echinococcus canadensis ECANG7_07075 N 0.452
EmuJ_000941400 Echinococcus multilocularis EmuJ_000941400 N 0.452
MCOS_0000588101 Mesocestoides corti MCOS_0000588101 N 0.452
TASK_0000795701 Taenia asiatica TASK_0000795701 N 0.452
TsM_000746700 Taenia solium TsM_000746700 N 0.452
hmgb1b Gasterosteus aculeatus ENSGACG00000011447 N 0.444
Sjc_0051340 Schistosoma japonicum Sjc_0051340 N 0.442
HNAJ_0000227501 Hymenolepis nana HNAJ_0000227501 N 0.438
hmg1/2 Ciona intestinalis ENSCING00000004075 N 0.435
T265_10726 Opisthorchis viverrini T265_10726 N 0.435
SSLN_0001302101 Schistocephalus solidus SSLN_0001302101 N 0.433
TTAC_0000939701 Hydatigera taeniaeformis TTAC_0000939701 N 0.433
ENSOGAG00000032152 Otolemur garnettii ENSOGAG00000032152 N 0.432
Sakowv30042012m.g Saccoglossus kowalevskii Sakowv30042012m.g N 0.431
ENSMODG00000004606 Monodelphis domestica ENSMODG00000004606 N 0.430
SPU_005572 Strongylocentrotus purpuratus SPU_005572 N 0.430
HMGB1 Bos taurus ENSBTAG00000014862 N 0.429
ENSCJAG00000008378 Callithrix jacchus ENSCJAG00000008378 N 0.429
ENSCPOG00000003985 Cavia porcellus ENSCPOG00000003985 N 0.429
ENSECAG00000005186 Equus caballus ENSECAG00000005186 N 0.429
HMGB1 Microcebus murinus ENSMICG00000006213 N 0.429
ENSMMUG00000001275 Macaca mulatta ENSMMUG00000001275 N 0.429
ENSMODG00000009238 Monodelphis domestica ENSMODG00000009238 N 0.429
ENSOARG00000017078 Ovis aries ENSOARG00000017078 N 0.429
ENSOCUG00000004133 Oryctolagus cuniculus ENSOCUG00000004133 N 0.429
ENSOGAG00000028411 Otolemur garnettii ENSOGAG00000028411 N 0.429
ENSPANG00000005029 Papio anubis ENSPANG00000005029 N 0.429
ENSPANG00000011105 Papio anubis ENSPANG00000011105 N 0.429
Hmgb2l1 Rattus norvegicus ENSRNOG00000013167 N 0.429
RGD1561694 Rattus norvegicus ENSRNOG00000029107 N 0.429
Hmgb2 Rattus norvegicus ENSRNOG00000033321 N 0.429
Hmg1l1 Rattus norvegicus ENSRNOG00000034130 N 0.429
Hmg1l1 Rattus norvegicus ENSRNOG00000051482 N 0.429
AC135696.1 Rattus norvegicus ENSRNOG00000058908 N 0.429
ENSSTOG00000000443 Ictidomys tridecemlineatus ENSSTOG00000000443 N 0.429
hmgb1a Takifugu rubripes ENSTRUG00000008452 N 0.428
ENSCJAG00000008384 Callithrix jacchus ENSCJAG00000008384 N 0.426
ENSCJAG00000022832 Callithrix jacchus ENSCJAG00000022832 N 0.425
ENSDNOG00000005537 Dasypus novemcinctus ENSDNOG00000005537 N 0.425
ENSOARG00000010383 Ovis aries ENSOARG00000010383 N 0.423
ENSOARG00000015382 Ovis aries ENSOARG00000015382 N 0.423
ENSOARG00000015955 Ovis aries ENSOARG00000015955 N 0.423
ENSOCUG00000021132 Oryctolagus cuniculus ENSOCUG00000021132 N 0.423
ENSOCUG00000023449 Oryctolagus cuniculus ENSOCUG00000023449 N 0.423
ENSPANG00000007527 Papio anubis ENSPANG00000007527 N 0.423
HMGB2 Sus scrofa ENSSSCG00000009704 N 0.423
Myotis_brandtii_Hmgb2_10018437 Myotis brandtii Myotis_brandtii_Hmgb2_10018437 N 0.423
AAH44009 Xenopus laevis AAH44009 N 0.423
ENSGMOG00000010657 Gadus morhua ENSGMOG00000010657 N 0.422
ENSPPYG00000011668 Pongo abelii ENSPPYG00000011668 N 0.422
A_00070 Schistosoma haematobium A_00070 N 0.422
SCUD_0001034301 Schistosoma curassoni SCUD_0001034301 N 0.422
SMRZ_0000842001 Schistosoma margrebowiei SMRZ_0000842001 N 0.422
SMTD_0001017101 Schistosoma mattheei SMTD_0001017101 N 0.422
ENSONIG00000005505 Oreochromis niloticus ENSONIG00000005505 N 0.421
ENSPFOG00000008464 Poecilia formosa ENSPFOG00000008464 N 0.420
ENSTBEG00000009427 Tupaia belangeri ENSTBEG00000009427 N 0.420
Smp_100090 Schistosoma mansoni Smp_100090 N 0.419
csin112095 Clonorchis sinensis csin112095 N 0.419
SROB_0000500401 Schistosoma rodhaini SROB_0000500401 N 0.419
ENSCSAVG00000000341 Ciona savignyi ENSCSAVG00000000341 N 0.417
hmgb3b Danio rerio ENSDARG00000006408 N 0.417
ENSOGAG00000033437 Otolemur garnettii ENSOGAG00000033437 N 0.417
ENSSTOG00000012404 Ictidomys tridecemlineatus ENSSTOG00000012404 N 0.417
ENSBTAG00000031711 Bos taurus ENSBTAG00000031711 N 0.416
ENSMPUG00000018359 Mustela putorius furo ENSMPUG00000018359 N 0.416
ENSPFOG00000004533 Poecilia formosa ENSPFOG00000004533 N 0.416
LOC688583 Rattus norvegicus ENSRNOG00000050910 N 0.416
ENSSSCG00000020770 Sus scrofa ENSSSCG00000020770 N 0.416
ENSSSCG00000024283 Sus scrofa ENSSSCG00000024283 N 0.416
ENSXMAG00000006844 Xiphophorus maculatus ENSXMAG00000006844 N 0.416
hmgb1b Takifugu rubripes ENSTRUG00000004822 N 0.415