CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSSCG00000025539
(
Sus scrofa
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSSSCG00000025539
T329151_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bbx
M00196_2.00
Mus musculus
TTCATTGA
TCAATGAA
PBM
Badis et al.(2009)
Bbx_3753
0.565
0.982
BBX
M05763_2.00
Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA
SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX
0.565
0.982
BBX
M05764_2.00
Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA
SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX
0.565
0.982
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000024291
Sox
80
136
ARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEV
Links
Other
Sox
family TFs
Other
Sus scrofa
TFs
115 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
bbx
Danio rerio
ENSDARG00000012699
I
0.741
BBX
Homo sapiens
ENSG00000114439
D
0.656
ENSLOCG00000005165
Lepisosteus oculatus
ENSLOCG00000005165
I
0.624
ENSAMEG00000002574
Ailuropoda melanoleuca
ENSAMEG00000002574
I
0.565
ENSAPLG00000005336
Anas platyrhynchos
ENSAPLG00000005336
I
0.565
BBX
Bos taurus
ENSBTAG00000006893
I
0.565
BBX
Canis familiaris
ENSCAFG00000009867
I
0.565
BBX
Callithrix jacchus
ENSCJAG00000004843
I
0.565
BBX
Cavia porcellus
ENSCPOG00000003575
I
0.565
ENSCSAG00000006313
Chlorocebus sabaeus
ENSCSAG00000006313
I
0.565
BBX
Dasypus novemcinctus
ENSDNOG00000013923
I
0.565
Bbx
Dipodomys ordii
ENSDORG00000008169
I
0.565
BBX
Equus caballus
ENSECAG00000023413
I
0.565
BBX
Erinaceus europaeus
ENSEEUG00000014092
I
0.565
BBX
Echinops telfairi
ENSETEG00000005122
I
0.565
BBX
Felis catus
ENSFCAG00000007296
I
0.565
BBX
Gorilla gorilla
ENSGGOG00000028441
I
0.565
ENSLACG00000001134
Latimeria chalumnae
ENSLACG00000001134
I
0.565
BBX
Meleagris gallopavo
ENSMGAG00000014384
I
0.565
BBX
Macaca mulatta
ENSMMUG00000008787
I
0.565
BBX
Monodelphis domestica
ENSMODG00000001748
I
0.565
ENSMPUG00000009907
Mustela putorius furo
ENSMPUG00000009907
I
0.565
Bbx
Mus musculus
ENSMUSG00000022641
D
0.565
ENSNLEG00000003524
Nomascus leucogenys
ENSNLEG00000003524
I
0.565
BBX
Ornithorhynchus anatinus
ENSOANG00000007497
I
0.565
ENSOARG00000018829
Ovis aries
ENSOARG00000018829
I
0.565
BBX
Oryctolagus cuniculus
ENSOCUG00000001686
I
0.565
BBX
Otolemur garnettii
ENSOGAG00000008056
I
0.565
BBX
Ochotona princeps
ENSOPRG00000017013
I
0.565
ENSPANG00000018335
Papio anubis
ENSPANG00000018335
I
0.565
BBX
Procavia capensis
ENSPCAG00000013443
I
0.565
ENSPPYG00000013578
Pongo abelii
ENSPPYG00000013578
I
0.565
ENSPSIG00000015872
Pelodiscus sinensis
ENSPSIG00000015872
I
0.565
BBX
Pan troglodytes
ENSPTRG00000015187
I
0.565
BBX
Pteropus vampyrus
ENSPVAG00000010534
I
0.565
Bbx
Rattus norvegicus
ENSRNOG00000001971
I
0.565
ENSSHAG00000003009
Sarcophilus harrisii
ENSSHAG00000003009
I
0.565
BBX
Sus scrofa
ENSSSCG00000011943
I
0.565
bbx
Tetraodon nigroviridis
ENSTNIG00000008596
I
0.565
ENSTSYG00000000857
Tarsius syrichta
ENSTSYG00000000857
I
0.565
BBX
Tursiops truncatus
ENSTTRG00000013182
I
0.565
BBX
Vicugna pacos
ENSVPAG00000007818
I
0.565
Aan_R014485
Calypte anna
Aan_R014485
I
0.565
Afo_R006638
Aptenodytes forsteri
Afo_R006638
I
0.565
Alligator_sinensis_CCG019960.1
Alligator sinensis
Alligator_sinensis_CCG019960.1
I
0.565
Cmyd_10015225
Chelonia mydas
Cmyd_10015225
I
0.565
ENSBTAP00000009058-D1
Bos grunniens
ENSBTAP00000009058-D1
I
0.565
ENSMMUP00000011518
Macaca fascicularis
ENSMMUP00000011518
I
0.565
Tal_R013114
Tyto alba
Tal_R013114
I
0.565
bbx.L
Xenopus laevis
XB-GENE-981431
I
0.565
XP_002932333
Xenopus tropicalis
XP_002932333
I
0.565
BBX
Anolis carolinensis
ENSACAG00000006532
I
0.562
ENSFALG00000006478
Ficedula albicollis
ENSFALG00000006478
I
0.562
ENSTGUG00000013611
Taeniopygia guttata
ENSTGUG00000013611
I
0.562
Brh_R008020
Buceros rhinoceros
Brh_R008020
I
0.562
Gfo_R002593
Geospiza fortis
Gfo_R002593
I
0.562
Ogr11041
Ophisaurus gracilis
Ogr11041
I
0.562
Pvit_02469
Pogona vitticeps
Pvit_02469
I
0.562
BBX
Myotis lucifugus
ENSMLUG00000007351
I
0.560
Myotis_brandtii_BBX_10016000
Myotis brandtii
Myotis_brandtii_BBX_10016000
I
0.560
ENSAMXG00000017656
Astyanax mexicanus
ENSAMXG00000017656
I
0.558
bbx
Gasterosteus aculeatus
ENSGACG00000020111
I
0.558
ENSGMOG00000015829
Gadus morhua
ENSGMOG00000015829
I
0.558
BBX
Loxodonta africana
ENSLAFG00000006362
I
0.558
bbx
Oryzias latipes
ENSORLG00000005486
I
0.558
ENSPFOG00000000813
Poecilia formosa
ENSPFOG00000000813
I
0.558
bbx
Takifugu rubripes
ENSTRUG00000003077
I
0.558
ENSXMAG00000009457
Xiphophorus maculatus
ENSXMAG00000009457
I
0.558
ENSONIG00000004775
Oreochromis niloticus
ENSONIG00000004775
I
0.555
DAPPUDRAFT_37735
Daphnia pulex
DAPPUDRAFT_37735
I
0.546
ENSLOCG00000004648
Lepisosteus oculatus
ENSLOCG00000004648
I
0.546
EFV48447
Trichinella spiralis
EFV48447
I
0.539
GL20955
Drosophila persimilis
FBgn0158550
I
0.514
NEMVEDRAFT_v1g122926
Nematostella vectensis
NEMVEDRAFT_v1g122926
I
0.512
HelroG148167
Helobdella robusta
HelroG148167
I
0.508
Sakowv30039572m.g
Saccoglossus kowalevskii
Sakowv30039572m.g
I
0.508
HelroG148142
Helobdella robusta
HelroG148142
I
0.507
NECAME_00080
Necator americanus
NECAME_00080
I
0.507
BGLB009093
Biomphalaria glabrata
BGLB009093
I
0.479
LotgiG100217
Lottia gigantea
LotgiG100217
I
0.473
Hsal_18129--FBpp0074818_DROME
Harpegnathos saltator
Hsal_18129--FBpp0074818_DROME
N
0.459
AFAF016820
Anopheles farauti
AFAF016820
I
0.455
TPHA_0C04350
Tetrapisispora phaffii
TPHA_0C04350
N
0.453
SS1G_05340
Sclerotinia sclerotiorum
SS1G_05340
N
0.450
CapteG223458
Capitella teleta
CapteG223458
I
0.447
CapteG39110
Capitella teleta
CapteG39110
I
0.447
CGI_10018417
Crassostrea gigas
CGI_10018417
I
0.447
LotgiG89909
Lottia gigantea
LotgiG89909
I
0.447
CpipJ_CPIJ005582
Culex pipiens
CpipJ_CPIJ005582
I
0.446
AAEL011161
Aedes aegypti
AAEL011161
I
0.446
CPIJ005582
Culex quinquefasciatus
CPIJ005582
I
0.446
ENSGMOG00000014613
Gadus morhua
ENSGMOG00000014613
N
0.446
ADIR004390
Anopheles dirus
ADIR004390
N
0.445
BTMF_0001637101
Brugia timori
BTMF_0001637101
I
0.445
AMEM012787
Anopheles merus
AMEM012787
I
0.442
ACHR003239
Anopheles christyi
ACHR003239
N
0.438
SPU_021407
Strongylocentrotus purpuratus
SPU_021407
N
0.436
OPUNC04G19550
Oryza punctata
OPUNC04G19550
N
0.434
BGIOSGA016928
Oryza indica
BGIOSGA016928
N
0.427
OB04G28810
Oryza brachyantha
OB04G28810
N
0.427
OBART04G21800
Oryza barthii
OBART04G21800
N
0.427
OGLUM04G21840
Oryza glumaepatula
OGLUM04G21840
N
0.427
OMERI04G18350
Oryza meridionalis
OMERI04G18350
N
0.427
ONIVA04G20340
Oryza nivara
ONIVA04G20340
N
0.427
ORGLA04G0188600
Oryza glaberrima
ORGLA04G0188600
N
0.427
ORUFI04G23400
Oryza rufipogon
ORUFI04G23400
N
0.427
OS04G0564600
Oryza sativa
OS04G0564600
N
0.427
DDB_G0279661
Dictyostelium discoideum
DDB_G0279661
N
0.423
CGI_10003963
Crassostrea gigas
CGI_10003963
I
0.422
ENSPMAG00000002631
Petromyzon marinus
ENSPMAG00000002631
I
0.421
BGIBMGA008274
Bombyx mori
BGIBMGA008274
I
0.420
HMEL012996
Heliconius melpomene
HMEL012996
I
0.420
RO3G_05566
Rhizopus oryzae
RO3G_05566
N
0.419
THITE_2010224
Thielavia terrestris
THITE_2010224
N
0.418
L798_09303
Zootermopsis nevadensis
L798_09303
I
0.415