hbp1 (Tetraodon nigroviridis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSTNIG00000016027 T329278_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hbp1
M00194_2.00 		Mus musculus
NNNDDNNN
NNNHHNNN		 PBM
Badis et al.(2009)
Hbp1_2241 		0.741 0.956
HBP1
M11299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HBP1_Q2 		0.741 0.956
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000019116 Sox 374 441

Links

Other Sox family TFs
Other Tetraodon nigroviridis TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATMYB13 Arabidopsis thaliana AT1G06180 D
MYB111 Arabidopsis thaliana AT5G49330 D
PK06182.1 Cannabis sativa PK06182.1 D
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I
AMTR_s00030p00146410 Amborella trichopoda AMTR_s00030p00146410 I
MYB8 Arabidopsis thaliana AT1G35515 I
MYB14 Arabidopsis thaliana AT2G31180 I
MYB12 Arabidopsis thaliana AT2G47460 I
MYB11 Arabidopsis thaliana AT3G62610 I
BGIOSGA003345 Oryza indica BGIOSGA003345 I
BGIOSGA010900 Oryza indica BGIOSGA010900 I
Bo3g039690 Brassica oleracea Bo3g039690 I
Bo3g044210 Brassica oleracea Bo3g044210 I
Bo4g004500 Brassica oleracea Bo4g004500 I
Bo4g176020 Brassica oleracea Bo4g176020 I
Bo4g176030 Brassica oleracea Bo4g176030 I
Bo7g092680 Brassica oleracea Bo7g092680 I
Bo8g095790 Brassica oleracea Bo8g095790 I
Bra000453 Brassica rapa Bra000453 I
Bra000680 Brassica rapa Bra000680 I
Bra007588 Brassica rapa Bra007588 I
Bra018267 Brassica rapa Bra018267 I
Bra036145 Brassica rapa Bra036145 I
Bra037419 Brassica rapa Bra037419 I
BRADI1G64687 Brachypodium distachyon BRADI1G64687 I
BRADI2G11676 Brachypodium distachyon BRADI2G11676 I
F775_11235 Aegilops tauschii F775_11235 I
F775_18434 Aegilops tauschii F775_18434 I
F775_21522 Aegilops tauschii F775_21522 I
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I
HOS10 Arabidopsis lyrata fgenesh2_kg.1__3635__AT1G35515.1 I
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I
MYB12 Arabidopsis lyrata fgenesh2_kg.4__2983__AT2G47460.1 I
GLYMA02G01740 Glycine max GLYMA02G01740 I
GLYMA03G37640 Glycine max GLYMA03G37640 I
GLYMA04G38240 Glycine max GLYMA04G38240 I
GLYMA06G16820 Glycine max GLYMA06G16820 I
GLYMA07G37142 Glycine max GLYMA07G37142 I
GLYMA09G04370 Glycine max GLYMA09G04370 I
GLYMA10G01801 Glycine max GLYMA10G01801 I
GLYMA10G38090 Glycine max GLYMA10G38090 I
GLYMA13G16890 Glycine max GLYMA13G16890 I
GLYMA15G15400 Glycine max GLYMA15G15400 I
GLYMA17G03480 Glycine max GLYMA17G03480 I
GLYMA17G05831 Glycine max GLYMA17G05831 I
GLYMA19G40250 Glycine max GLYMA19G40250 I
GRMZM2G022686 Zea mays GRMZM2G022686 I
GRMZM2G051256 Zea mays GRMZM2G051256 I
GRMZM2G051528 Zea mays GRMZM2G051528 I
GRMZM2G057027 Zea mays GRMZM2G057027 I
GRMZM2G084799 Zea mays GRMZM2G084799 I
GRMZM2G160838 Zea mays GRMZM2G160838 I
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I
GSMUA_Achr4G19030_001 Musa acuminata GSMUA_Achr4G19030_001 I
GSMUA_Achr5G21250_001 Musa acuminata GSMUA_Achr5G21250_001 I
GSMUA_Achr6G04400_001 Musa acuminata GSMUA_Achr6G04400_001 I
GSMUA_Achr8G10470_001 Musa acuminata GSMUA_Achr8G10470_001 I
GSMUA_Achr8G22690_001 Musa acuminata GSMUA_Achr8G22690_001 I
GSMUA_Achr9G16040_001 Musa acuminata GSMUA_Achr9G16040_001 I
GSMUA_AchrUn_randomG12700_001 Musa acuminata GSMUA_AchrUn_randomG12700_001 I
LPERR03G12690 Leersia perrieri LPERR03G12690 I
MLOC_57220 Hordeum vulgare MLOC_57220 I
MTR_1g100653 Medicago truncatula MTR_1g100653 I
MTR_2g034790 Medicago truncatula MTR_2g034790 I
MTR_4g121460 Medicago truncatula MTR_4g121460 I
MTR_4g125520 Medicago truncatula MTR_4g125520 I
MTR_7g109320 Medicago truncatula MTR_7g109320 I
OB01G22640 Oryza brachyantha OB01G22640 I
OB03G24320 Oryza brachyantha OB03G24320 I
OBART03G14380 Oryza barthii OBART03G14380 I
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I
OGLUM03G14490 Oryza glumaepatula OGLUM03G14490 I
OMERI03G13130 Oryza meridionalis OMERI03G13130 I
ONIVA03G15280 Oryza nivara ONIVA03G15280 I
OPUNC03G13890 Oryza punctata OPUNC03G13890 I
ORGLA03G0138900 Oryza glaberrima ORGLA03G0138900 I
ORGLA03G0196700 Oryza glaberrima ORGLA03G0196700 I
ORUFI01G13920 Oryza rufipogon ORUFI01G13920 I
ORUFI03G15030 Oryza rufipogon ORUFI03G15030 I
OS01G0305900 Oryza sativa OS01G0305900 I
PGSC0003DMG400004371 Solanum tuberosum PGSC0003DMG400004371 I
PGSC0003DMG400007304 Solanum tuberosum PGSC0003DMG400007304 I
PGSC0003DMG400009033 Solanum tuberosum PGSC0003DMG400009033 I
POPTR_0002s03960 Populus trichocarpa POPTR_0002s03960 I
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I
POPTR_0010s15090 Populus trichocarpa POPTR_0010s15090 I
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I
PRUPE_ppa004560mg Prunus persica PRUPE_ppa004560mg I
PRUPE_ppa007594mg Prunus persica PRUPE_ppa007594mg I
PRUPE_ppa017136mg Prunus persica PRUPE_ppa017136mg I
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I
Sb01g037670 Sorghum bicolor Sb01g037670 I
Sb03g012550 Sorghum bicolor Sb03g012550 I
MYB111 Arabidopsis lyrata scaffold_801313.1 I
SELMODRAFT_120788 Selaginella moellendorffii SELMODRAFT_120788 I
SELMODRAFT_450007 Selaginella moellendorffii SELMODRAFT_450007 I
Si002107m.g Setaria italica Si002107m.g I
Si038905m.g Setaria italica Si038905m.g I
Si039538m.g Setaria italica Si039538m.g I
Solyc01g079620.2 Solanum lycopersicum Solyc01g079620.2 I
Solyc06g009710.2 Solanum lycopersicum Solyc06g009710.2 I
Solyc12g049350.1 Solanum lycopersicum Solyc12g049350.1 I
TCM_000535 Theobroma cacao TCM_000535 I
TCM_004509 Theobroma cacao TCM_004509 I
TCM_004777 Theobroma cacao TCM_004777 I
TCM_010778 Theobroma cacao TCM_010778 I
TCM_011660 Theobroma cacao TCM_011660 I
TCM_011664 Theobroma cacao TCM_011664 I
TCM_021317 Theobroma cacao TCM_021317 I
TCM_021318 Theobroma cacao TCM_021318 I
TCM_029121 Theobroma cacao TCM_029121 I
TCM_037376 Theobroma cacao TCM_037376 I
TCM_037379 Theobroma cacao TCM_037379 I
TCM_037555 Theobroma cacao TCM_037555 I
TCM_037559 Theobroma cacao TCM_037559 I
Traes_1DS_711044AD5 Triticum aestivum Traes_1DS_711044AD5 I
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I
TRIUR3_05136 Triticum urartu TRIUR3_05136 I
TRIUR3_31689 Triticum urartu TRIUR3_31689 I
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I
VIT_05s0077g01360 Vitis vinifera VIT_05s0077g01360 I
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I
VIT_09s0002g01400 Vitis vinifera VIT_09s0002g01400 I
VIT_11s0016g01310 Vitis vinifera VIT_11s0016g01310 I
VIT_17s0000g02650 Vitis vinifera VIT_17s0000g02650 I
Ca_03154 Cicer arietinum Ca_03154 I
Ca_03498 Cicer arietinum Ca_03498 I
Cla009418 Citrullus lanatus Cla009418 I
Cla011528 Citrullus lanatus Cla011528 I
Cla017646 Citrullus lanatus Cla017646 I
Cla022107 Citrullus lanatus Cla022107 I
Pm005570 Prunus mume Pm005570 I
Pm008294 Prunus mume Pm008294 I
Pm020104 Prunus mume Pm020104 I
Pm025102 Prunus mume Pm025102 I
Pm027048 Prunus mume Pm027048 I
30068.m002544 Ricinus communis 30068.m002544 I
cassava1644.valid.m1 Manihot esculenta cassava1644.valid.m1 I
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I
cassava28702.m1 Manihot esculenta cassava28702.m1 I
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I
cassava36364.valid.m1 Manihot esculenta cassava36364.valid.m1 I
cassava36365.valid.m1 Manihot esculenta cassava36365.valid.m1 I
cassava40469.m1 Manihot esculenta cassava40469.m1 I
cassava4975.m1 Manihot esculenta cassava4975.m1 I
Cucsa.069500 Cucumis sativus Cucsa.069500 I
Cucsa.252700 Cucumis sativus Cucsa.252700 I
mgf003233m Mimulus guttatus mgf003233m I
mgf006108m Mimulus guttatus mgf006108m I
mgf012733m Mimulus guttatus mgf012733m I
mgf024278m Mimulus guttatus mgf024278m I
mgf025197m Mimulus guttatus mgf025197m I
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I
Aquca_073_00013 Aquilegia coerulea Aquca_073_00013 I
Bostr.13158s0261 Boechera stricta Bostr.13158s0261 I
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I
Bostr.25219s0339 Boechera stricta Bostr.25219s0339 I
Bostr.25993s0011 Boechera stricta Bostr.25993s0011 I
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I
Cagra.6296s0007 Capsella grandiflora Cagra.6296s0007 I
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I
Cagra.9781s0007 Capsella grandiflora Cagra.9781s0007 I
Carubv10019345m.g Capsella rubella Carubv10019345m.g I
Carubv10023905m.g Capsella rubella Carubv10023905m.g I
Carubv10024801m.g Capsella rubella Carubv10024801m.g I
Carubv10026694m.g Capsella rubella Carubv10026694m.g I
Ciclev10005376m.g Citrus clementina Ciclev10005376m.g I
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I
Ciclev10023756m.g Citrus clementina Ciclev10023756m.g I
Eucgr.A00200 Eucalyptus grandis Eucgr.A00200 I
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I
Eucgr.C00826 Eucalyptus grandis Eucgr.C00826 I
Eucgr.C02096 Eucalyptus grandis Eucgr.C02096 I
Eucgr.C03555 Eucalyptus grandis Eucgr.C03555 I
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I
Eucgr.H01058 Eucalyptus grandis Eucgr.H01058 I
evm.TU.supercontig_18.11 Carica papaya evm.TU.supercontig_18.11 I
evm.TU.supercontig_28.71 Carica papaya evm.TU.supercontig_28.71 I
evm.TU.supercontig_9.95 Carica papaya evm.TU.supercontig_9.95 I
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I
gene09406-v1.0-hybrid Fragaria vesca gene09406-v1.0-hybrid I
gene15390-v1.0-hybrid Fragaria vesca gene15390-v1.0-hybrid I
Gorai.001G020600 Gossypium raimondii Gorai.001G020600 I
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I
Gorai.005G162600 Gossypium raimondii Gorai.005G162600 I
Gorai.007G124000 Gossypium raimondii Gorai.007G124000 I
Gorai.008G141000 Gossypium raimondii Gorai.008G141000 I
Gorai.010G087200 Gossypium raimondii Gorai.010G087200 I
Gorai.011G195100 Gossypium raimondii Gorai.011G195100 I
Lus10001458.g Linum usitatissimum Lus10001458.g I
Lus10002435.g Linum usitatissimum Lus10002435.g I
Lus10010273.g Linum usitatissimum Lus10010273.g I
Lus10016855.g Linum usitatissimum Lus10016855.g I
Lus10027459.g Linum usitatissimum Lus10027459.g I
Lus10036336.g Linum usitatissimum Lus10036336.g I
Lus10036453.g Linum usitatissimum Lus10036453.g I
Lus10039214.g Linum usitatissimum Lus10039214.g I
MDP0000031172 Malus domestica MDP0000031172 I
MDP0000119725 Malus domestica MDP0000119725 I
MDP0000136874 Malus domestica MDP0000136874 I
MDP0000140609 Malus domestica MDP0000140609 I
MDP0000210851 Malus domestica MDP0000210851 I
MDP0000298505 Malus domestica MDP0000298505 I
MDP0000607330 Malus domestica MDP0000607330 I
MDP0000868578 Malus domestica MDP0000868578 I
MDP0000887107 Malus domestica MDP0000887107 I
orange1.1g014829m.g Citrus sinensis orange1.1g014829m.g I
orange1.1g041081m.g Citrus sinensis orange1.1g041081m.g I
orange1.1g046093m.g Citrus sinensis orange1.1g046093m.g I
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I
Pavir.J00442 Panicum virgatum Pavir.J00442 I
SapurV1A.0050s0720 Salix purpurea SapurV1A.0050s0720 I
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I
PK16315.1 Cannabis sativa PK16315.1 I
PK16958.1 Cannabis sativa PK16958.1 I
PK23594.1 Cannabis sativa PK23594.1 I
chr5.CM0239.580.nc Lotus japonicus chr5.CM0239.580.nc I
LjSGA_007368.1 Lotus japonicus LjSGA_007368.1 I
PDK_20s1388491g004 Phoenix dactylifera PDK_20s1388491g004 I
PDK_20s1554342g001 Phoenix dactylifera PDK_20s1554342g001 I