CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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JAAARDRAFT_33297
(
Jaapia argillacea
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
JAAARDRAFT_33297
T330715_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ROX1
M00070_2.00
Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN
PBM
Badis et al.(2008)
ROX1_2099
0.425
0.391
ROX1
M07498_2.00
Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1
0.425
0.391
ROX1
M08607_2.00
Saccharomyces cerevisiae
BYATTGTN
NACAATRV
Misc
DeBoer et al.(2011)
YPR065W_1396
0.425
0.391
ROX1
M11346_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6_01
0.425
0.391
ROX1
M11347_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ROX1_Q6
0.425
0.391
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KDQ59727
Sox
165
235
IPRPRNPFIIFRCHYAKDPNNDGLLSSTGERSVSKRAAEAWSRLPSQQKQHFKLLAELEKKQHELRYPDYR
Links
Other
Sox
family TFs
Other
Jaapia argillacea
TFs
210 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL012501
Aedes aegypti
AAEL012501
N
AALB010370
Anopheles albimanus
AALB010370
N
AARA000663
Anopheles arabiensis
AARA000663
N
AATE012391
Anopheles atroparvus
AATE012391
N
ACHR006509
Anopheles christyi
ACHR006509
N
ACUA005983
Anopheles culicifacies
ACUA005983
N
ADIR002346
Anopheles dirus
ADIR002346
N
AFUN002603
Anopheles funestus
AFUN002603
N
AGAP011847
Anopheles gambiae
AGAP011847
N
AMAM002685
Anopheles maculatus
AMAM002685
N
AMEC011551
Anopheles melas
AMEC011551
N
AMEM000663
Anopheles merus
AMEM000663
N
AMIN008552
Anopheles minimus
AMIN008552
N
AQUA009060
Anopheles quadriannulatus
AQUA009060
N
ASIS019330
Anopheles sinensis
ASIS019330
N
ASTEI05063
Anopheles stephensi
ASTEI05063
N
CPIJ001450
Culex quinquefasciatus
CPIJ001450
N