CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LACBIDRAFT_312467
(
Laccaria bicolor
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
LACBIDRAFT_312467
T330877_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fmf-1
M02491_2.00
Neurospora crassa
TCTTTGTY
RACAAAGA
PBM
Weirauch et al.(2014)
pTH8941
0.459
0.304
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EDR01146
Sox
87
156
IPRPPNAFILFRSSFIKSQHVSTEVETNHSTLSKIIGLTWQNLPNEERQVWHAKAKLALDEHKRKFPQYA
Links
Other
Sox
family TFs
Other
Laccaria bicolor
TFs
359 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_6AS_2BDC1663A
Triticum aestivum
Traes_6AS_2BDC1663A
N
TRIUR3_00259
Triticum urartu
TRIUR3_00259
N