LotgiG231408 (Lottia gigantea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 LotgiG231408 T330952_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.415 0.522
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LotgiP231408 Sox 156 224

Links

Other Sox family TFs
Other Lottia gigantea TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.586
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.562
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.530
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.530
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.514
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.508
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.499
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.499
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.482
SMAR000790 Strigamia maritima SMAR000790 I 0.481
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.479
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.464
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.464
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.450
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.446
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.445
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.444
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.439
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.436
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.436
hmg20a Danio rerio ENSDARG00000031198 I 0.431
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.431
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.431
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.431
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.431
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.430
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.430
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.429
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.429
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.429
hmg20b Oryzias latipes ENSORLG00000004640 I 0.429
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.429
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.429
TC011144 Tribolium castaneum TC011144 N 0.428
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.426
D917_09636 Trichinella nativa D917_09636 N 0.416
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.415
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.415
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.415
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.415
HMG20B Canis familiaris ENSCAFG00000019215 I 0.415
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.415
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.415
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.415
hmg20b Danio rerio ENSDARG00000042045 I 0.415
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.415
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.415
HMG20B Felis catus ENSFCAG00000026167 I 0.415
HMG20B Homo sapiens ENSG00000064961 I 0.415
HMG20B Gallus gallus ENSGALG00000027838 I 0.415
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.415
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.415
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.415
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.415
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.415
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.415
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.415
Hmg20b Mus musculus ENSMUSG00000020232 D 0.415
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.415
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.415
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.415
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.415
HMG20B Procavia capensis ENSPCAG00000010772 I 0.415
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.415
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.415
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.415
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.415
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.415
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.415
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.415
Aan_R011684 Calypte anna Aan_R011684 I 0.415
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.415
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.415
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.415
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.415
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.415
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.415
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.415
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.415
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.415