CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ONIVA04G20340
(
Oryza nivara
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ONIVA04G20340
T331648_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ONIVA04G20340.1
Sox
25
81
PKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPD
ONIVA04G20340.2
Sox
25
81
PKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDEEKAQYGGKKPD
Links
Other
Sox
family TFs
Other
Oryza nivara
TFs
71 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_06533
Aegilops tauschii
F775_06533
N
0.631
ANCCAN_02453
Ancylostoma caninum
ANCCAN_02453
N
0.445
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.432
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.443
BRADI5G18460
Brachypodium distachyon
BRADI5G18460
N
0.609
PK14705.1
Cannabis sativa
PK14705.1
I
0.475
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.515
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.481
bbx
Danio rerio
ENSDARG00000012699
I
0.427
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.428
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.428
GLYMA16G22060
Glycine max
GLYMA16G22060
I
0.470
Gorai.013G018500
Gossypium raimondii
Gorai.013G018500
I
0.460
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.450
Gorai.001G198900
Gossypium raimondii
Gorai.001G198900
I
0.436
Hsal_18129--FBpp0074818_DROME
Harpegnathos saltator
Hsal_18129--FBpp0074818_DROME
N
0.468
MLOC_57354
Hordeum vulgare
MLOC_57354
N
0.510
MLOC_77667
Hordeum vulgare
MLOC_77667
I
0.440
LPERR04G17840
Leersia perrieri
LPERR04G17840
N
0.539
MTR_8g018100
Medicago truncatula
MTR_8g018100
N
0.464
OESDEN_24828
Oesophagostomum dentatum
OESDEN_24828
N
0.415
OBART04G21800
Oryza barthii
OBART04G21800
N
0.741
OBART08G00070
Oryza barthii
OBART08G00070
I
0.420
OB04G28810
Oryza brachyantha
OB04G28810
N
0.741
ORGLA04G0188600
Oryza glaberrima
ORGLA04G0188600
N
0.741
OGLUM08G00090
Oryza glumaepatula
OGLUM08G00090
I
0.420
OGLUM04G21840
Oryza glumaepatula
OGLUM04G21840
N
0.741
BGIOSGA027819
Oryza indica
BGIOSGA027819
I
0.420
BGIOSGA027814
Oryza indica
BGIOSGA027814
I
0.420
BGIOSGA016928
Oryza indica
BGIOSGA016928
N
0.741
OLONG_013579
Oryza longistaminata
OLONG_013579
N
0.460
OLONG_014445
Oryza longistaminata
OLONG_014445
I
0.420
OMERI04G18350
Oryza meridionalis
OMERI04G18350
N
0.741
ONIVA08G00070
Oryza nivara
ONIVA08G00070
I
0.420
OPUNC04G19550
Oryza punctata
OPUNC04G19550
N
0.735
OPUNC08G00150
Oryza punctata
OPUNC08G00150
I
0.420
ORUFI04G23400
Oryza rufipogon
ORUFI04G23400
N
0.741
ORUFI08G00080
Oryza rufipogon
ORUFI08G00080
I
0.420
OS04G0564600
Oryza sativa
OS04G0564600
N
0.741
OS08G0101100
Oryza sativa
OS08G0101100
I
0.420
Pavir.J10680
Panicum virgatum
Pavir.J10680
N
0.450
Pavir.Gb00881
Panicum virgatum
Pavir.Gb00881
N
0.428
Pavir.Ga01019
Panicum virgatum
Pavir.Ga01019
N
0.428
Pavir.Ba01379
Panicum virgatum
Pavir.Ba01379
I
0.457
PDK_20s1709771g002
Phoenix dactylifera
PDK_20s1709771g002
N
0.523
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.421
PRUPE_ppa011596mg
Prunus persica
PRUPE_ppa011596mg
I
0.452
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.439
Si007288m.g
Setaria italica
Si007288m.g
I
0.436
Si011290m.g
Setaria italica
Si011290m.g
N
0.568
Si014434m.g
Setaria italica
Si014434m.g
N
0.418
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.428
Sb07g000230
Sorghum bicolor
Sb07g000230
N
0.450
Sb06g025440
Sorghum bicolor
Sb06g025440
N
0.417
SVUK_0000188101
Strongylus vulgaris
SVUK_0000188101
N
0.445
ENSSSCG00000025539
Sus scrofa
ENSSSCG00000025539
I
0.427
TELCIR_05566
Teladorsagia circumcincta
TELCIR_05566
N
0.415
TCM_042534
Theobroma cacao
TCM_042534
I
0.511
Traes_2BL_3EF023231
Triticum aestivum
Traes_2BL_3EF023231
N
0.540
Traes_2AL_020BC1DF2
Triticum aestivum
Traes_2AL_020BC1DF2
N
0.540
Traes_2DL_6CACFD720
Triticum aestivum
Traes_2DL_6CACFD720
N
0.631
Traes_7AL_959534EDB
Triticum aestivum
Traes_7AL_959534EDB
I
0.437
Traes_7BL_871FCAF2F
Triticum aestivum
Traes_7BL_871FCAF2F
I
0.437
Traes_7DL_824BFE90C
Triticum aestivum
Traes_7DL_824BFE90C
I
0.437
TRIUR3_35367
Triticum urartu
TRIUR3_35367
I
0.437
GRMZM2G145968
Zea mays
GRMZM2G145968
N
0.428
GRMZM2G144398
Zea mays
GRMZM2G144398
N
0.421
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.443
GRMZM2G125648
Zea mays
GRMZM2G125648
N
0.450
AC186524.3_FG005
Zea mays
AC186524.3_FG005
N
0.420