PGSC0003DMG400023744 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400023744 T331854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400061018 Sox 165 208
PGSC0003DMT400061019 Sox 165 208

Links

Other Sox family TFs
Other Solanum tuberosum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.646
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.646
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.646
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.646
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.595
30116.m000393 Ricinus communis 30116.m000393 N 0.646
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.649
mgf000387m Mimulus guttatus mgf000387m N 0.608
mgf013454m Mimulus guttatus mgf013454m N 0.608
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.630
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.678
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.631
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.615
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.671
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.642
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.546
MDP0000597087 Malus domestica MDP0000597087 N 0.562
MDP0000634922 Malus domestica MDP0000634922 N 0.568
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.678
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.631
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.646
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.646
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.671
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.567
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.487
PK04394.1 Cannabis sativa PK04394.1 N 0.677
PK16821.1 Cannabis sativa PK16821.1 N 0.642
OS02G0770600 Oryza sativa OS02G0770600 N 0.646
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.605
F775_20121 Aegilops tauschii F775_20121 N 0.608
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.564
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.499
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.646
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.608
OB02G40920 Oryza brachyantha OB02G40920 N 0.640
OB07G29110 Oryza brachyantha OB07G29110 N 0.646
OBART02G34050 Oryza barthii OBART02G34050 N 0.646
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.646
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.646
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.646
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.646
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.616
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.567
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.676
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.649
Si017699m.g Setaria italica Si017699m.g N 0.646
TCM_006422 Theobroma cacao TCM_006422 N 0.555
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.608
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.608
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.576
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.587
Cla002005 Citrullus lanatus Cla002005 N 0.649