CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si000646m.g
(
Setaria italica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Si000646m.g
T332538_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si000646m
Sox
557
625
PKRAMTPFMYFSMAERGNMKSSNPDLPTTEIAKKLGEMWQKMSSEEKQPYIQQAQVDKKRYEKESAVYR
Links
Other
Sox
family TFs
Other
Setaria italica
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G032252
Zea mays
GRMZM2G032252
N
0.741
Sb03g003450
Sorghum bicolor
Sb03g003450
N
0.741
Pavir.Ea00282
Panicum virgatum
Pavir.Ea00282
N
0.741
Pavir.J08546
Panicum virgatum
Pavir.J08546
N
0.741
BGIOSGA002908
Oryza indica
BGIOSGA002908
N
0.730
OBART01G05540
Oryza barthii
OBART01G05540
N
0.730
OGLUM01G06010
Oryza glumaepatula
OGLUM01G06010
N
0.730
OLONG_023518
Oryza longistaminata
OLONG_023518
N
0.730
OMERI01G05760
Oryza meridionalis
OMERI01G05760
N
0.730
ONIVA01G06280
Oryza nivara
ONIVA01G06280
N
0.730
ORGLA01G0051500
Oryza glaberrima
ORGLA01G0051500
N
0.730
ORUFI01G05970
Oryza rufipogon
ORUFI01G05970
N
0.730
SSRP1-A
Oryza sativa
OS01G0184900
N
0.730
LPERR01G05200
Leersia perrieri
LPERR01G05200
N
0.724
OB01G15440
Oryza brachyantha
OB01G15440
N
0.724
OPUNC01G05380
Oryza punctata
OPUNC01G05380
N
0.679
OPUNC02G20230
Oryza punctata
OPUNC02G20230
N
0.679
F775_29723
Aegilops tauschii
F775_29723
I
0.637
Traes_1AS_3FCB35E65
Triticum aestivum
Traes_1AS_3FCB35E65
I
0.637
Traes_1BS_15F9D276D
Triticum aestivum
Traes_1BS_15F9D276D
I
0.637
Traes_1DS_C7F1E9F38
Triticum aestivum
Traes_1DS_C7F1E9F38
I
0.637
BGIOSGA019295
Oryza indica
BGIOSGA019295
N
0.635
LPERR05G04880
Leersia perrieri
LPERR05G04880
N
0.635
OB05G15230
Oryza brachyantha
OB05G15230
N
0.635
OBART05G05520
Oryza barthii
OBART05G05520
N
0.635
OGLUM05G05400
Oryza glumaepatula
OGLUM05G05400
N
0.635
OLONG_012679
Oryza longistaminata
OLONG_012679
N
0.635
OMERI05G05210
Oryza meridionalis
OMERI05G05210
N
0.635
ONIVA05G05990
Oryza nivara
ONIVA05G05990
N
0.635
OPUNC05G05150
Oryza punctata
OPUNC05G05150
N
0.635
ORGLA05G0049600
Oryza glaberrima
ORGLA05G0049600
N
0.635
ORUFI05G05850
Oryza rufipogon
ORUFI05G05850
N
0.635
SSRP1-B
Oryza sativa
OS05G0182600
N
0.635
MLOC_27773
Hordeum vulgare
MLOC_27773
I
0.628
BRADI2G33580
Brachypodium distachyon
BRADI2G33580
N
0.625
Si021575m.g
Setaria italica
Si021575m.g
N
0.604
Pavir.Ca01033
Panicum virgatum
Pavir.Ca01033
N
0.604
Pavir.J20558
Panicum virgatum
Pavir.J20558
N
0.604
GRMZM5G842484
Zea mays
GRMZM5G842484
N
0.597
Sb09g005650
Sorghum bicolor
Sb09g005650
N
0.597
F775_28104
Aegilops tauschii
F775_28104
N
0.593
Traes_3AS_AAAAD30B5
Triticum aestivum
Traes_3AS_AAAAD30B5
N
0.593
TRAES3BF096800150CFD_g
Triticum aestivum
TRAES3BF096800150CFD_g
N
0.593
TRIUR3_14091
Triticum urartu
TRIUR3_14091
N
0.593
Pavir.J10741
Panicum virgatum
Pavir.J10741
N
0.590
Si024096m.g
Setaria italica
Si024096m.g
N
0.581
MLOC_6673
Hordeum vulgare
MLOC_6673
N
0.574
AMAG_00757
Allomyces macrogynus
AMAG_00757
N
0.455
AMAG_02260
Allomyces macrogynus
AMAG_02260
N
0.455
cgd2_2120
Cryptosporidium parvum
cgd2_2120
N
0.454
Chro.20230
Cryptosporidium hominis
Chro.20230
N
0.454
mgf024995m
Mimulus guttatus
mgf024995m
I
0.452
SELMODRAFT_159743
Selaginella moellendorffii
SELMODRAFT_159743
I
0.450
SELMODRAFT_166865
Selaginella moellendorffii
SELMODRAFT_166865
I
0.450
BRADI2G05430
Brachypodium distachyon
BRADI2G05430
N
0.447
YQE_02071
Dendroctonus ponderosae
YQE_02071
N
0.446
AAEL011425
Aedes aegypti
AAEL011425
I
0.431
AABR07009373.1
Rattus norvegicus
ENSRNOG00000011429
I
0.422
MBM_02410
Marssonina brunnea
MBM_02410
I
0.420
A1O1_01197
Capronia coronata
A1O1_01197
I
0.417
A1O3_08778
Capronia epimyces
A1O3_08778
I
0.417
A1O7_01726
Cladophialophora yegresii
A1O7_01726
I
0.417
G647_10093
Cladophialophora carrionii
G647_10093
I
0.417
HMPREF1120_00213
Exophiala dermatitidis
HMPREF1120_00213
I
0.417
PV05_09944
Exophiala xenobiotica
PV05_09944
I
0.417
PV06_04154
Exophiala oligosperma
PV06_04154
I
0.417
PV08_04655
Exophiala spinifera
PV08_04655
I
0.417
PV11_09703
Exophiala sideris
PV11_09703
I
0.417
Z518_04911
Rhinocladiella mackenziei
Z518_04911
I
0.417
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
0.417