CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si014434m.g
(
Setaria italica
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Si014434m.g
T332543_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si014434m
Sox
94
158
RKRTPTAFFLFMDDFRKEFKAANPDNKNVATVAKEGGERWKSMTDEEKKPYHDKAAELKAHAENG
Links
Other
Sox
family TFs
Other
Setaria italica
TFs
92 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa026912mg
Prunus persica
PRUPE_ppa026912mg
I
0.612
MDP0000205665
Malus domestica
MDP0000205665
I
0.602
OBART08G00070
Oryza barthii
OBART08G00070
I
0.569
OGLUM08G00090
Oryza glumaepatula
OGLUM08G00090
I
0.569
OLONG_014445
Oryza longistaminata
OLONG_014445
I
0.569
Eucgr.J00336
Eucalyptus grandis
Eucgr.J00336
I
0.494
ONIVA08G00070
Oryza nivara
ONIVA08G00070
I
0.569
OPUNC08G00150
Oryza punctata
OPUNC08G00150
I
0.569
Carubv10001858m.g
Capsella rubella
Carubv10001858m.g
I
0.463
Cagra.0086s0060
Capsella grandiflora
Cagra.0086s0060
I
0.463
ORUFI08G00080
Oryza rufipogon
ORUFI08G00080
I
0.569
OS08G0101100
Oryza sativa
OS08G0101100
I
0.569
PGSC0003DMG400025304
Solanum tuberosum
PGSC0003DMG400025304
I
0.546
HMGB6
Populus trichocarpa
POPTR_0007s15320
I
0.595
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.568
Si007288m.g
Setaria italica
Si007288m.g
I
0.417
Solyc04g008820.2
Solanum lycopersicum
Solyc04g008820.2
I
0.505
TCM_007659
Theobroma cacao
TCM_007659
I
0.531
Traes_7AL_959534EDB
Triticum aestivum
Traes_7AL_959534EDB
I
0.532
Traes_7BL_871FCAF2F
Triticum aestivum
Traes_7BL_871FCAF2F
I
0.532
Traes_7DL_824BFE90C
Triticum aestivum
Traes_7DL_824BFE90C
I
0.532
TRIUR3_35367
Triticum urartu
TRIUR3_35367
I
0.532
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.533
Cucsa.300030
Cucumis sativus
Cucsa.300030
I
0.507
30131.m007272
Ricinus communis
30131.m007272
I
0.516
Ca_05351
Cicer arietinum
Ca_05351
I
0.421
Cla009222
Citrullus lanatus
Cla009222
I
0.507
Pm006054
Prunus mume
Pm006054
I
0.612
MLOC_77667
Hordeum vulgare
MLOC_77667
I
0.529
BRADI3G12920
Brachypodium distachyon
BRADI3G12920
I
0.447
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.440
Bra029371
Brassica rapa
Bra029371
I
0.531
Bra026498
Brassica rapa
Bra026498
I
0.473
PK03866.1
Cannabis sativa
PK03866.1
I
0.522
Bo9g014140
Brassica oleracea
Bo9g014140
I
0.473
Bo2g160920
Brassica oleracea
Bo2g160920
I
0.531
GLYMA10G43440
Glycine max
GLYMA10G43440
I
0.440
BGIOSGA027819
Oryza indica
BGIOSGA027819
I
0.569
GLYMA20G23370
Glycine max
GLYMA20G23370
I
0.440
SapurV1A.0766s0120
Salix purpurea
SapurV1A.0766s0120
I
0.595
BGIOSGA027814
Oryza indica
BGIOSGA027814
I
0.569
GSMUA_AchrUn_randomG05290_001
Musa acuminata
GSMUA_AchrUn_randomG05290_001
I
0.463
BGIOSGA023639
Oryza indica
BGIOSGA023639
I
0.464
AMTR_s00171p00070550
Amborella trichopoda
AMTR_s00171p00070550
I
0.444
MDOA007633
Musca domestica
MDOA007633
N
0.437
PPAI002521
Phlebotomus papatasi
PPAI002521
N
0.440
orange1.1g026850m.g
Citrus sinensis
orange1.1g026850m.g
N
0.538
AMAG_00757
Allomyces macrogynus
AMAG_00757
N
0.418
PDK_20s1709771g002
Phoenix dactylifera
PDK_20s1709771g002
N
0.571
mgf009124m
Mimulus guttatus
mgf009124m
N
0.444
PDK_20s1355261g001
Phoenix dactylifera
PDK_20s1355261g001
N
0.465
fgeneshCV_pg.C_scaffold_4000123
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_4000123
N
0.466
SNAPOd2T00000181001
Oikopleura dioica
SNAPOd2T00000181001
N
0.428
Bostr.10199s0131
Boechera stricta
Bostr.10199s0131
N
0.463
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
0.440
Thhalv10004817m.g
Eutrema salsugineum
Thhalv10004817m.g
N
0.512
Ciclev10016587m.g
Citrus clementina
Ciclev10016587m.g
N
0.538
evm.TU.supercontig_247.1
Carica papaya
evm.TU.supercontig_247.1
N
0.643
Pavir.J10680
Panicum virgatum
Pavir.J10680
N
0.679
fgenesh1_pg.4_#_114
Coccomyxa subellipsoidea C169
fgenesh1_pg.4_#_114
N
0.466
Pavir.Fb00026
Panicum virgatum
Pavir.Fb00026
N
0.553
OESDEN_24828
Oesophagostomum dentatum
OESDEN_24828
N
0.480
Lus10041009.g
Linum usitatissimum
Lus10041009.g
N
0.520
MTR_8g018100
Medicago truncatula
MTR_8g018100
N
0.436
AMAG_02260
Allomyces macrogynus
AMAG_02260
N
0.418
AAEL002381
Aedes aegypti
AAEL002381
N
0.424
BGIOSGA016928
Oryza indica
BGIOSGA016928
N
0.418
Ssrp
Drosophila melanogaster
FBgn0010278
N
0.437
GF12460
Drosophila ananassae
FBgn0089497
N
0.437
GG19998
Drosophila erecta
FBgn0112197
N
0.437
GH21151
Drosophila grimshawi
FBgn0128613
N
0.430
GD25013
Drosophila simulans
FBgn0196325
N
0.437
GJ21774
Drosophila virilis
FBgn0208892
N
0.437
GE11532
Drosophila yakuba
FBgn0229332
N
0.437
fgenesh2_kg.6__1935__AT5G23420.1
Arabidopsis lyrata
fgenesh2_kg.6__1935__AT5G23420.1
N
0.433
GRMZM2G125648
Zea mays
GRMZM2G125648
N
0.671
HMEL015307
Heliconius melpomene
HMEL015307
N
0.418
LPERR08G00140
Leersia perrieri
LPERR08G00140
N
0.507
ENSMMUP00000037751
Macaca fascicularis
ENSMMUP00000037751
N
0.417
OB04G28810
Oryza brachyantha
OB04G28810
N
0.418
OB08G10120
Oryza brachyantha
OB08G10120
N
0.550
OBART04G21800
Oryza barthii
OBART04G21800
N
0.418
OGLUM04G21840
Oryza glumaepatula
OGLUM04G21840
N
0.418
OMERI04G18350
Oryza meridionalis
OMERI04G18350
N
0.418
ONIVA04G20340
Oryza nivara
ONIVA04G20340
N
0.418
OPUNC04G19550
Oryza punctata
OPUNC04G19550
N
0.418
ORGLA04G0188600
Oryza glaberrima
ORGLA04G0188600
N
0.418
ORUFI04G23400
Oryza rufipogon
ORUFI04G23400
N
0.418
OS04G0564600
Oryza sativa
OS04G0564600
N
0.418
Sb07g000230
Sorghum bicolor
Sb07g000230
N
0.675
cgd2_2120
Cryptosporidium parvum
cgd2_2120
N
0.428
Chro.20230
Cryptosporidium hominis
Chro.20230
N
0.428