CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_006422
(
Theobroma cacao
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
TCM_006422
T332823_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOX97393
Sox
170
211
FVGTFKELRKHMRADHPCARPREVDPTLEQKWRRLERERERE
EOX97394
Sox
170
211
FVGTFKELRKHMRADHPCARPREVDPTLEQKWRRLERERERE
EOX97395
Sox
170
211
FVGTFKELRKHMRADHPCARPREVDPTLEQKWRRLERERERE
Links
Other
Sox
family TFs
Other
Theobroma cacao
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.005G260200
Gossypium raimondii
Gorai.005G260200
N
0.671
MDP0000597087
Malus domestica
MDP0000597087
N
0.653
Aquca_014_00165
Aquilegia coerulea
Aquca_014_00165
N
0.648
30116.m000393
Ricinus communis
30116.m000393
N
0.639
Ciclev10001827m.g
Citrus clementina
Ciclev10001827m.g
N
0.639
orange1.1g020440m.g
Citrus sinensis
orange1.1g020440m.g
N
0.639
cassava19406.valid.m1
Manihot esculenta
cassava19406.valid.m1
N
0.625
F775_20121
Aegilops tauschii
F775_20121
N
0.620
MLOC_54605
Hordeum vulgare
MLOC_54605
N
0.620
Traes_6DL_647FC758E1
Triticum aestivum
Traes_6DL_647FC758E1
N
0.620
TRIUR3_20834
Triticum urartu
TRIUR3_20834
N
0.620
mgf000387m
Mimulus guttatus
mgf000387m
N
0.620
mgf013454m
Mimulus guttatus
mgf013454m
N
0.620
Ciclev10001601m.g
Citrus clementina
Ciclev10001601m.g
N
0.619
orange1.1g017878m.g
Citrus sinensis
orange1.1g017878m.g
N
0.619
BRADI3G57700
Brachypodium distachyon
BRADI3G57700
N
0.616
SapurV1A.0647s0030
Salix purpurea
SapurV1A.0647s0030
N
0.614
POPTR_0001s21610
Populus trichocarpa
POPTR_0001s21610
N
0.612
SapurV1A.0869s0080
Salix purpurea
SapurV1A.0869s0080
N
0.612
gene11787-v1.0-hybrid
Fragaria vesca
gene11787-v1.0-hybrid
N
0.602
PK04394.1
Cannabis sativa
PK04394.1
N
0.599
POPTR_0003s01620
Populus trichocarpa
POPTR_0003s01620
N
0.597
VIT_12s0034g00960
Vitis vinifera
VIT_12s0034g00960
N
0.587
evm.TU.supercontig_49.134
Carica papaya
evm.TU.supercontig_49.134
N
0.587
PGSC0003DMG400026151
Solanum tuberosum
PGSC0003DMG400026151
N
0.581
BGIOSGA009119
Oryza indica
BGIOSGA009119
N
0.576
LPERR02G27910
Leersia perrieri
LPERR02G27910
N
0.576
OB07G29110
Oryza brachyantha
OB07G29110
N
0.576
OBART02G34050
Oryza barthii
OBART02G34050
N
0.576
OLONG_015646
Oryza longistaminata
OLONG_015646
N
0.576
OPUNC02G31450
Oryza punctata
OPUNC02G31450
N
0.576
ORGLA02G0294700
Oryza glaberrima
ORGLA02G0294700
N
0.576
OS02G0770600
Oryza sativa
OS02G0770600
N
0.576
Si017699m.g
Setaria italica
Si017699m.g
N
0.576
Pavir.Aa00349
Panicum virgatum
Pavir.Aa00349
N
0.576
Pavir.J01310
Panicum virgatum
Pavir.J01310
N
0.576
OMERI02G32400
Oryza meridionalis
OMERI02G32400
I
0.576
ONIVA02G36110
Oryza nivara
ONIVA02G36110
I
0.576
OGLUM02G35200
Oryza glumaepatula
OGLUM02G35200
I
0.576
ORUFI02G35580
Oryza rufipogon
ORUFI02G35580
I
0.576
PRUPE_ppa007591mg
Prunus persica
PRUPE_ppa007591mg
N
0.571
OB02G40920
Oryza brachyantha
OB02G40920
N
0.570
Cla002005
Citrullus lanatus
Cla002005
N
0.570
Cucsa.239250
Cucumis sativus
Cucsa.239250
N
0.570
PK16821.1
Cannabis sativa
PK16821.1
N
0.558
PGSC0003DMG400023744
Solanum tuberosum
PGSC0003DMG400023744
N
0.555
VIT_18s0001g03950
Vitis vinifera
VIT_18s0001g03950
N
0.546
evm.TU.supercontig_49.133
Carica papaya
evm.TU.supercontig_49.133
N
0.531
MDP0000634922
Malus domestica
MDP0000634922
N
0.528
GSMUA_Achr2G01240_001
Musa acuminata
GSMUA_Achr2G01240_001
N
0.526
GSMUA_Achr8G18160_001
Musa acuminata
GSMUA_Achr8G18160_001
N
0.519
Thhalv10028879m.g
Eutrema salsugineum
Thhalv10028879m.g
N
0.449