TCM_006422 (Theobroma cacao)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TCM_006422 T332823_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EOX97393 Sox 170 211
EOX97394 Sox 170 211
EOX97395 Sox 170 211

Links

Other Sox family TFs
Other Theobroma cacao TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_20121 Aegilops tauschii F775_20121 N 0.620
Aquca_014_00165 Aquilegia coerulea Aquca_014_00165 N 0.648
BRADI3G57700 Brachypodium distachyon BRADI3G57700 N 0.616
PK04394.1 Cannabis sativa PK04394.1 N 0.599
PK16821.1 Cannabis sativa PK16821.1 N 0.558
evm.TU.supercontig_49.134 Carica papaya evm.TU.supercontig_49.134 N 0.587
evm.TU.supercontig_49.133 Carica papaya evm.TU.supercontig_49.133 N 0.531
Cla002005 Citrullus lanatus Cla002005 N 0.570
Ciclev10001827m.g Citrus clementina Ciclev10001827m.g N 0.639
Ciclev10001601m.g Citrus clementina Ciclev10001601m.g N 0.619
orange1.1g020440m.g Citrus sinensis orange1.1g020440m.g N 0.639
orange1.1g017878m.g Citrus sinensis orange1.1g017878m.g N 0.619
Cucsa.239250 Cucumis sativus Cucsa.239250 N 0.570
Thhalv10028879m.g Eutrema salsugineum Thhalv10028879m.g N 0.449
gene11787-v1.0-hybrid Fragaria vesca gene11787-v1.0-hybrid N 0.602
Gorai.005G260200 Gossypium raimondii Gorai.005G260200 N 0.671
MLOC_54605 Hordeum vulgare MLOC_54605 N 0.620
LPERR02G27910 Leersia perrieri LPERR02G27910 N 0.576
MDP0000634922 Malus domestica MDP0000634922 N 0.528
MDP0000597087 Malus domestica MDP0000597087 N 0.653
cassava19406.valid.m1 Manihot esculenta cassava19406.valid.m1 N 0.625
mgf013454m Mimulus guttatus mgf013454m N 0.620
mgf000387m Mimulus guttatus mgf000387m N 0.620
GSMUA_Achr2G01240_001 Musa acuminata GSMUA_Achr2G01240_001 N 0.526
GSMUA_Achr8G18160_001 Musa acuminata GSMUA_Achr8G18160_001 N 0.519
OBART02G34050 Oryza barthii OBART02G34050 N 0.576
OB02G40920 Oryza brachyantha OB02G40920 N 0.570
OB07G29110 Oryza brachyantha OB07G29110 N 0.576
ORGLA02G0294700 Oryza glaberrima ORGLA02G0294700 N 0.576
OGLUM02G35200 Oryza glumaepatula OGLUM02G35200 I 0.576
BGIOSGA009119 Oryza indica BGIOSGA009119 N 0.576
OLONG_015646 Oryza longistaminata OLONG_015646 N 0.576
OMERI02G32400 Oryza meridionalis OMERI02G32400 I 0.576
ONIVA02G36110 Oryza nivara ONIVA02G36110 I 0.576
OPUNC02G31450 Oryza punctata OPUNC02G31450 N 0.576
ORUFI02G35580 Oryza rufipogon ORUFI02G35580 I 0.576
OS02G0770600 Oryza sativa OS02G0770600 N 0.576
Pavir.Aa00349 Panicum virgatum Pavir.Aa00349 N 0.576
Pavir.J01310 Panicum virgatum Pavir.J01310 N 0.576
POPTR_0001s21610 Populus trichocarpa POPTR_0001s21610 N 0.612
POPTR_0003s01620 Populus trichocarpa POPTR_0003s01620 N 0.597
PRUPE_ppa007591mg Prunus persica PRUPE_ppa007591mg N 0.571
30116.m000393 Ricinus communis 30116.m000393 N 0.639
SapurV1A.0647s0030 Salix purpurea SapurV1A.0647s0030 N 0.614
SapurV1A.0869s0080 Salix purpurea SapurV1A.0869s0080 N 0.612
Si017699m.g Setaria italica Si017699m.g N 0.576
PGSC0003DMG400026151 Solanum tuberosum PGSC0003DMG400026151 N 0.581
PGSC0003DMG400023744 Solanum tuberosum PGSC0003DMG400023744 N 0.555
Traes_6DL_647FC758E1 Triticum aestivum Traes_6DL_647FC758E1 N 0.620
TRIUR3_20834 Triticum urartu TRIUR3_20834 N 0.620
VIT_12s0034g00960 Vitis vinifera VIT_12s0034g00960 N 0.587
VIT_18s0001g03950 Vitis vinifera VIT_18s0001g03950 N 0.546