Traes_1BS_15F9D276D (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Traes_1BS_15F9D276D T332971_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.426 0.406
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_1BS_15F9D276D.1 Sox 558 626

Links

Other Sox family TFs
Other Triticum aestivum TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZIP53 Arabidopsis thaliana AT3G62420 D
OS02G0728001 Oryza sativa OS02G0728001 D
BGIOSGA008968 Oryza indica BGIOSGA008968 I
BGIOSGA019118 Oryza indica BGIOSGA019118 I
Bo6g079450 Brassica oleracea Bo6g079450 I
Bo8g097830 Brassica oleracea Bo8g097830 I
Bra003500 Brassica rapa Bra003500 I
Bra007679 Brassica rapa Bra007679 I
Bra039631 Brassica rapa Bra039631 I
ATBZIP53 Arabidopsis lyrata fgenesh2_kg.5__2740__AT3G62420.1 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I
MTR_1g087040 Medicago truncatula MTR_1g087040 I
OBART02G31030 Oryza barthii OBART02G31030 I
OGLUM02G31690 Oryza glumaepatula OGLUM02G31690 I
OLONG_004835 Oryza longistaminata OLONG_004835 I
OMERI02G29910 Oryza meridionalis OMERI02G29910 I
ONIVA02G34180 Oryza nivara ONIVA02G34180 I
ONIVA05G02010 Oryza nivara ONIVA05G02010 I
OPUNC02G28720 Oryza punctata OPUNC02G28720 I
ORGLA02G0265300 Oryza glaberrima ORGLA02G0265300 I
ORUFI02G32700 Oryza rufipogon ORUFI02G32700 I
PGSC0003DMG400003529 Solanum tuberosum PGSC0003DMG400003529 I
PGSC0003DMG400021431 Solanum tuberosum PGSC0003DMG400021431 I
PGSC0003DMG400022589 Solanum tuberosum PGSC0003DMG400022589 I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
POPTR_0002s19720 Populus trichocarpa POPTR_0002s19720 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I
POPTR_0014s11590 Populus trichocarpa POPTR_0014s11590 I
Solyc02g084860.1 Solanum lycopersicum Solyc02g084860.1 I
Solyc02g092090.1 Solanum lycopersicum Solyc02g092090.1 I
Solyc03g033730.1 Solanum lycopersicum Solyc03g033730.1 I
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I
VIT_05s0077g01140 Vitis vinifera VIT_05s0077g01140 I
Ca_09362 Cicer arietinum Ca_09362 I
Cla016841 Citrullus lanatus Cla016841 I
30076.m004659 Ricinus communis 30076.m004659 I
30131.m007078 Ricinus communis 30131.m007078 I
cassava23775.valid.m1 Manihot esculenta cassava23775.valid.m1 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I
cassava36049.valid.m1 Manihot esculenta cassava36049.valid.m1 I
cassava40461.m1 Manihot esculenta cassava40461.m1 I
cassava41140.m1 Manihot esculenta cassava41140.m1 I
Cucsa.109420 Cucumis sativus Cucsa.109420 I
mgf003466m Mimulus guttatus mgf003466m I
mgf018581m Mimulus guttatus mgf018581m I
Aquca_003_00556 Aquilegia coerulea Aquca_003_00556 I
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I
Aquca_022_00003 Aquilegia coerulea Aquca_022_00003 I
Cagra.0483s0006 Capsella grandiflora Cagra.0483s0006 I
Carubv10018852m.g Capsella rubella Carubv10018852m.g I
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I
evm.TU.supercontig_18.43 Carica papaya evm.TU.supercontig_18.43 I
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
Gorai.001G144200 Gossypium raimondii Gorai.001G144200 I
Gorai.007G122800 Gossypium raimondii Gorai.007G122800 I
Gorai.008G065300 Gossypium raimondii Gorai.008G065300 I
Lus10010005.g Linum usitatissimum Lus10010005.g I
Lus10025024.g Linum usitatissimum Lus10025024.g I
Lus10040428.g Linum usitatissimum Lus10040428.g I
MDP0000205823 Malus domestica MDP0000205823 I
MDP0000239026 Malus domestica MDP0000239026 I
MDP0000437680 Malus domestica MDP0000437680 I
MDP0000863909 Malus domestica MDP0000863909 I
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I
SapurV1A.0158s0220 Salix purpurea SapurV1A.0158s0220 I
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I
SapurV1A.3521s0020 Salix purpurea SapurV1A.3521s0020 I
Thhalv10006418m.g Eutrema salsugineum Thhalv10006418m.g I
PK03779.1 Cannabis sativa PK03779.1 I
PK07533.1 Cannabis sativa PK07533.1 I
chr2.CM0021.50.nd Lotus japonicus chr2.CM0021.50.nd I
BGIOSGA019116 Oryza indica BGIOSGA019116 N
BRADI2G38380 Brachypodium distachyon BRADI2G38380 N
MLOC_52125 Hordeum vulgare MLOC_52125 N
OB05G12090 Oryza brachyantha OB05G12090 N
OBART05G02070 Oryza barthii OBART05G02070 N
OGLUM05G02130 Oryza glumaepatula OGLUM05G02130 N
OMERI05G02170 Oryza meridionalis OMERI05G02170 N
OPUNC05G01750 Oryza punctata OPUNC05G01750 N
ORGLA05G0020300 Oryza glaberrima ORGLA05G0020300 N
ORUFI05G02170 Oryza rufipogon ORUFI05G02170 N
OS05G0129300 Oryza sativa OS05G0129300 N
Si023562m.g Setaria italica Si023562m.g N
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N
Cla022814 Citrullus lanatus Cla022814 N
cassava1498.valid.m1 Manihot esculenta cassava1498.valid.m1 N
cassava42526.valid.m1 Manihot esculenta cassava42526.valid.m1 N
Cucsa.248080 Cucumis sativus Cucsa.248080 N
Aquca_024_00067 Aquilegia coerulea Aquca_024_00067 N
Ciclev10002731m.g Citrus clementina Ciclev10002731m.g N
Eucgr.G01645 Eucalyptus grandis Eucgr.G01645 N
Eucgr.L01789 Eucalyptus grandis Eucgr.L01789 N
Gorai.012G155000 Gossypium raimondii Gorai.012G155000 N
orange1.1g041765m.g Citrus sinensis orange1.1g041765m.g N
Pavir.Ca00746 Panicum virgatum Pavir.Ca00746 N
Pavir.J06041 Panicum virgatum Pavir.J06041 N