CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_5DL_BCFE39D13
(
Triticum aestivum
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Traes_5DL_BCFE39D13
T332999_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_5DL_BCFE39D13.2
Sox
1
45
MGEFRKEFKQKNPKNKSVAAVGKAAGGRWKSLSESWCTSFARALL
Links
Other
Sox
family TFs
Other
Triticum aestivum
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_24487
Aegilops tauschii
F775_24487
N
0.577
cassava14282.m1
Manihot esculenta
cassava14282.m1
N
0.506
TRIUR3_05701
Triticum urartu
TRIUR3_05701
N
0.502
OLONG_013579
Oryza longistaminata
OLONG_013579
N
0.496
Traes_7AL_364A6E96F
Triticum aestivum
Traes_7AL_364A6E96F
N
0.495
Traes_7DL_0CEFCB39D
Triticum aestivum
Traes_7DL_0CEFCB39D
N
0.495
PDK_20s1781681g001
Phoenix dactylifera
PDK_20s1781681g001
N
0.491
SBAD_0001127201
Soboliphyme baturini
SBAD_0001127201
N
0.479
Traes_7BL_F45C15FA2
Triticum aestivum
Traes_7BL_F45C15FA2
N
0.467
TRAES3BF116200180CFD_g
Triticum aestivum
TRAES3BF116200180CFD_g
N
0.453
Gorai.002G115100
Gossypium raimondii
Gorai.002G115100
I
0.448
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.448
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.442
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.442
Si007288m.g
Setaria italica
Si007288m.g
I
0.435
MDP0000242568
Malus domestica
MDP0000242568
I
0.430
gene00778-v1.0-hybrid
Fragaria vesca
gene00778-v1.0-hybrid
N
0.429
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.427
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.427
PGSC0003DMG400008501
Solanum tuberosum
PGSC0003DMG400008501
I
0.427
MTR_8g018100
Medicago truncatula
MTR_8g018100
N
0.418
GPLIN_001054700
Globodera pallida
GPLIN_001054700
N
0.418
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.417
SMU15030327
Schmidtea mediterranea
SMU15030327
N
0.417