VDAG_07007 (Verticillium dahliae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VDAG_07007 T333206_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.490 0.464
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.490 0.464
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.490 0.464
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.490 0.464
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.490 0.464
Sox12
M00205_2.00 		Mus musculus
HWTTGTBNNN
NNNVACAAWD		 PBM
Badis et al.(2009)
Sox12_3957 		0.443 0.333
SOX12
M05789_2.00 		Homo sapiens
NATTGTTCGGK
MCCGAACAATN		 SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX 		0.443 0.333
SOX12
M05790_2.00 		Homo sapiens
YATTGTTCBKT
AMVGAACAATR		 SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX 		0.443 0.333
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.442 0.406
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.442 0.406
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.437 0.362
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.437 0.362
Sox15
M00202_2.00 		Mus musculus
WTTVWNNNN
NNNNWBAAW		 PBM
Badis et al.(2009)
Sox15_3457 		0.435 0.348
SOX15
M03508_2.00 		Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT		 SELEX
Jolma et al.(2013)
SOX15_1 		0.435 0.333
SOX15
M03509_2.00 		Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT		 SELEX
Jolma et al.(2013)
SOX15_2 		0.435 0.333
SOX15
M03510_2.00 		Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT		 SELEX
Jolma et al.(2013)
SOX15_3 		0.435 0.333
SOX15
M05893_2.00 		Homo sapiens
YYWTTGTNHN
NDNACAAWRR		 SMiLE-seq
Isakova et al.(2017)
SOX15 		0.435 0.333
SOX15
M11308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX15_Q3 		0.435 0.333
egl-13
M00710_2.00 		Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN		 PBM
Narasimhan et al.(2015)
pTH9125 		0.433 0.290
Sox102F
M03981_2.00 		Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT		 SELEX
Nitta et al.(2015)
Sox102F_1 		0.433 0.290
Sox102F
M03982_2.00 		Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN		 SELEX
Nitta et al.(2015)
Sox102F_2 		0.433 0.290
sem-2
M02488_2.00 		Caenorhabditis elegans
NNNHVNNNNN
NNNNNBDNNN		 PBM
Weirauch et al.(2014)
pTH9043 		0.425 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGY15843 Sox 132 200

Links

Other Sox family TFs
Other Verticillium dahliae TFs

714 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY63 Arabidopsis thaliana AT1G66600 D
WRKY62 Arabidopsis thaliana AT5G01900 D
WRKY38 Arabidopsis thaliana AT5G22570 D
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I
WRKY67 Arabidopsis thaliana AT1G66550 I
WRKY66 Arabidopsis thaliana AT1G80590 I
BGIOSGA004703 Oryza indica BGIOSGA004703 I
BGIOSGA030113 Oryza indica BGIOSGA030113 I
Bo01002s040 Brassica oleracea Bo01002s040 I
Bo2g024040 Brassica oleracea Bo2g024040 I
Bo2g095820 Brassica oleracea Bo2g095820 I
Bo5g068250 Brassica oleracea Bo5g068250 I
Bo6g066790 Brassica oleracea Bo6g066790 I
Bra002421 Brassica rapa Bra002421 I
Bra008454 Brassica rapa Bra008454 I
Bra008456 Brassica rapa Bra008456 I
Bra008459 Brassica rapa Bra008459 I
Bra020196 Brassica rapa Bra020196 I
Bra020197 Brassica rapa Bra020197 I
Bra023211 Brassica rapa Bra023211 I
Bra028918 Brassica rapa Bra028918 I
BRADI2G53495 Brachypodium distachyon BRADI2G53495 I
F775_22564 Aegilops tauschii F775_22564 I
F775_23182 Aegilops tauschii F775_23182 I
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I
GLYMA04G40121 Glycine max GLYMA04G40121 I
GRMZM2G029292 Zea mays GRMZM2G029292 I
GRMZM2G158328 Zea mays GRMZM2G158328 I
GRMZM2G382350 Zea mays GRMZM2G382350 I
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I
MLOC_22356 Hordeum vulgare MLOC_22356 I
MLOC_6114 Hordeum vulgare MLOC_6114 I
MTR_2g075610 Medicago truncatula MTR_2g075610 I
MTR_2g075750 Medicago truncatula MTR_2g075750 I
MTR_8g005750 Medicago truncatula MTR_8g005750 I
OB01G44140 Oryza brachyantha OB01G44140 I
OB01G44150 Oryza brachyantha OB01G44150 I
OB05G27850 Oryza brachyantha OB05G27850 I
OBART01G35310 Oryza barthii OBART01G35310 I
OBART05G20330 Oryza barthii OBART05G20330 I
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I
OLONG_002978 Oryza longistaminata OLONG_002978 I
OMERI01G32480 Oryza meridionalis OMERI01G32480 I
ONIVA01G40340 Oryza nivara ONIVA01G40340 I
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
OPUNC05G18000 Oryza punctata OPUNC05G18000 I
ORGLA01G0291800 Oryza glaberrima ORGLA01G0291800 I
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I
ORUFI01G38660 Oryza rufipogon ORUFI01G38660 I
OS01G0820700 Oryza sativa OS01G0820700 I
PGSC0003DMG400027582 Solanum tuberosum PGSC0003DMG400027582 I
Sb03g038170 Sorghum bicolor Sb03g038170 I
WRKY38 Arabidopsis lyrata scaffold_602308.1 I
Si004791m.g Setaria italica Si004791m.g I
Si012735m.g Setaria italica Si012735m.g I
TCM_045555 Theobroma cacao TCM_045555 I
Traes_3AL_2297D6E18 Triticum aestivum Traes_3AL_2297D6E18 I
Traes_3B_8B0D448D8 Triticum aestivum Traes_3B_8B0D448D8 I
Traes_3DL_48F7A19D2 Triticum aestivum Traes_3DL_48F7A19D2 I
TRIUR3_27575 Triticum urartu TRIUR3_27575 I
TRIUR3_33054 Triticum urartu TRIUR3_33054 I
WRKY55 Vitis vinifera VIT_13s0067g03130 I
Ca_18932 Cicer arietinum Ca_18932 I
Pm019076 Prunus mume Pm019076 I
Cucsa.177060 Cucumis sativus Cucsa.177060 I
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I
Carubv10002472m.g Capsella rubella Carubv10002472m.g I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10021860m.g Capsella rubella Carubv10021860m.g I
Carubv10021899m.g Capsella rubella Carubv10021899m.g I
Carubv10022120m.g Capsella rubella Carubv10022120m.g I
Carubv10022162m.g Capsella rubella Carubv10022162m.g I
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I
Gorai.012G014000 Gossypium raimondii Gorai.012G014000 I
Lus10014177.g Linum usitatissimum Lus10014177.g I
Lus10025133.g Linum usitatissimum Lus10025133.g I
MDP0000460139 Malus domestica MDP0000460139 I
MDP0000828055 Malus domestica MDP0000828055 I
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I
Pavir.Eb03559 Panicum virgatum Pavir.Eb03559 I
Pavir.Gb01556 Panicum virgatum Pavir.Gb01556 I
Pavir.J31756 Panicum virgatum Pavir.J31756 I
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I