VDAG_07007 (Verticillium dahliae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VDAG_07007 T333206_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.490 0.464
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.490 0.464
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.490 0.464
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.490 0.464
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.490 0.464
Sox12
M00205_2.00 		Mus musculus
HWTTGTBNNN
NNNVACAAWD		 PBM
Badis et al.(2009)
Sox12_3957 		0.443 0.333
SOX12
M05789_2.00 		Homo sapiens
NATTGTTCGGK
MCCGAACAATN		 SELEX
Yin et al.(2017)
SOX12_eDBD_HT-SELEX 		0.443 0.333
SOX12
M05790_2.00 		Homo sapiens
YATTGTTCBKT
AMVGAACAATR		 SELEX
Yin et al.(2017)
SOX12_eDBD_Methyl-HT-SELEX 		0.443 0.333
mat1-Mc
M11340_2.00 		Schizosaccharomyces pombe
NRMNNAACAAAGAVRYMW
AKRYBTCTTTGTTNNKYN		 Transfac
Matys et al.(2006)
F$MAT1MC_01 		0.442 0.406
mat1-Mc
M11341_2.00 		Schizosaccharomyces pombe
YYHATTGTYD
HRACAATDRR		 Transfac
Matys et al.(2006)
F$MAT1MC_02 		0.442 0.406
ste11
M11342_2.00 		Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH		 Transfac
Matys et al.(2006)
F$STE11_01 		0.437 0.362
ste11
M11343_2.00 		Schizosaccharomyces pombe Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$STE11_02 		0.437 0.362
Sox15
M00202_2.00 		Mus musculus
WTTVWNNNN
NNNNWBAAW		 PBM
Badis et al.(2009)
Sox15_3457 		0.435 0.348
SOX15
M03508_2.00 		Homo sapiens
AACAATAMCATTGTT
AACAATGKTATTGTT		 SELEX
Jolma et al.(2013)
SOX15_1 		0.435 0.333
SOX15
M03509_2.00 		Homo sapiens
ATCAATAMCATTGAT
ATCAATGKTATTGAT		 SELEX
Jolma et al.(2013)
SOX15_2 		0.435 0.333
SOX15
M03510_2.00 		Homo sapiens
ATGAATAACATTCAT
ATGAATGTTATTCAT		 SELEX
Jolma et al.(2013)
SOX15_3 		0.435 0.333
SOX15
M05893_2.00 		Homo sapiens
YYWTTGTNHN
NDNACAAWRR		 SMiLE-seq
Isakova et al.(2017)
SOX15 		0.435 0.333
SOX15
M11308_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX15_Q3 		0.435 0.333
egl-13
M00710_2.00 		Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN		 PBM
Narasimhan et al.(2015)
pTH9125 		0.433 0.290
Sox102F
M03981_2.00 		Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT		 SELEX
Nitta et al.(2015)
Sox102F_1 		0.433 0.290
Sox102F
M03982_2.00 		Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN		 SELEX
Nitta et al.(2015)
Sox102F_2 		0.433 0.290
sem-2
M02488_2.00 		Caenorhabditis elegans
NNNHVNNNNN
NNNNNBDNNN		 PBM
Weirauch et al.(2014)
pTH9043 		0.425 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EGY15843 Sox 132 200

Links

Other Sox family TFs
Other Verticillium dahliae TFs

714 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G11200 Brachypodium distachyon BRADI1G11200 N
LPERR03G26090 Leersia perrieri LPERR03G26090 N
GSMUA_Achr2G21580_001 Musa acuminata GSMUA_Achr2G21580_001 N
GSMUA_Achr3G02200_001 Musa acuminata GSMUA_Achr3G02200_001 N
OBART03G31460 Oryza barthii OBART03G31460 N
ORGLA03G0291000 Oryza glaberrima ORGLA03G0291000 N
BGIOSGA009949 Oryza indica BGIOSGA009949 N
OMERI03G28040 Oryza meridionalis OMERI03G28040 N
ONIVA03G32760 Oryza nivara ONIVA03G32760 N
OPUNC03G28630 Oryza punctata OPUNC03G28630 N
ORUFI03G32760 Oryza rufipogon ORUFI03G32760 N
OS03G0708800 Oryza sativa OS03G0708800 N
Pavir.Ib04304 Panicum virgatum Pavir.Ib04304 N
Si036257m.g Setaria italica Si036257m.g N
Sb01g010570 Sorghum bicolor Sb01g010570 N
Traes_4BS_1281828D6 Triticum aestivum Traes_4BS_1281828D6 N
GRMZM2G162405 Zea mays GRMZM2G162405 N
GRMZM2G041818 Zea mays GRMZM2G041818 N