CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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YQE_10385
(
Dendroctonus ponderosae
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
YQE_10385
T333350_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN
NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.436
0.478
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENN72996
Sox
31
97
PKAPLTGYNLYTNEQRSFFKDSSLKFYEITKIVGNRWSSLTLEEKKPYLDRAEEEKRQYKEAVKQYR
Links
Other
Sox
family TFs
Other
Dendroctonus ponderosae
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TOE2
Arabidopsis thaliana
AT5G60120
D
Pm018608
Prunus mume
Pm018608
I
PK16652.1
Cannabis sativa
PK16652.1
I
Thhalv10013367m.g
Eutrema salsugineum
Thhalv10013367m.g
I
Lus10040365.g
Linum usitatissimum
Lus10040365.g
I
Gorai.011G241700
Gossypium raimondii
Gorai.011G241700
I
Gorai.003G139800
Gossypium raimondii
Gorai.003G139800
I
gene23316-v1.0-hybrid
Fragaria vesca
gene23316-v1.0-hybrid
I
Carubv10026292m.g
Capsella rubella
Carubv10026292m.g
I
Cagra.1317s0005
Capsella grandiflora
Cagra.1317s0005
I
Bostr.26833s0222
Boechera stricta
Bostr.26833s0222
I
Cucsa.165940
Cucumis sativus
Cucsa.165940
I
Cla020387
Citrullus lanatus
Cla020387
I
Sb10g001490
Sorghum bicolor
Sb10g001490
I
PRUPE_ppa018704mg
Prunus persica
PRUPE_ppa018704mg
I
PGSC0003DMG400012038
Solanum tuberosum
PGSC0003DMG400012038
I
PGSC0003DMG400011046
Solanum tuberosum
PGSC0003DMG400011046
I
MTR_1g049140
Medicago truncatula
MTR_1g049140
I
GRMZM2G416701
Zea mays
GRMZM2G416701
I
Bra020262
Brassica rapa
Bra020262
I
Bra002510
Brassica rapa
Bra002510
I
Bo9g141100
Brassica oleracea
Bo9g141100
I