YQE_10385 (Dendroctonus ponderosae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 YQE_10385 T333350_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN

NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.436 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN72996 Sox 31 97

Links

Other Sox family TFs
Other Dendroctonus ponderosae TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TOE2 Arabidopsis thaliana AT5G60120 D
Pm018608 Prunus mume Pm018608 I
PK16652.1 Cannabis sativa PK16652.1 I
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I
Lus10040365.g Linum usitatissimum Lus10040365.g I
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I
Carubv10026292m.g Capsella rubella Carubv10026292m.g I
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I
Cucsa.165940 Cucumis sativus Cucsa.165940 I
Cla020387 Citrullus lanatus Cla020387 I
Sb10g001490 Sorghum bicolor Sb10g001490 I
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I
MTR_1g049140 Medicago truncatula MTR_1g049140 I
GRMZM2G416701 Zea mays GRMZM2G416701 I
Bra020262 Brassica rapa Bra020262 I
Bra002510 Brassica rapa Bra002510 I
Bo9g141100 Brassica oleracea Bo9g141100 I