29631.m001046 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 29631.m001046 T333887_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.552 0.554
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.514 0.492
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.485 0.400
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.485 0.400
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.485 0.492
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.485 0.492
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29631.m001046 Sox 124 202

Links

Other Sox family TFs
Other Ricinus communis TFs

468 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSMEUG00000013008 Macropus eugenii ENSMEUG00000013008 N
ENSNLEG00000006719 Nomascus leucogenys ENSNLEG00000006719 N
ENSP00000240050-D1 Bos grunniens ENSP00000240050-D1 N
ENSPPYG00000004910 Pongo abelii ENSPPYG00000004910 N
ENSSTOG00000010181 Ictidomys tridecemlineatus ENSSTOG00000010181 N
ENSTSYG00000010530 Tarsius syrichta ENSTSYG00000010530 N
MTERF2 Cavia porcellus ENSCPOG00000006958 N
MTERF2 Vicugna pacos ENSVPAG00000008539 N
MTERF2 Tursiops truncatus ENSTTRG00000012809 N
Mterf2 Rattus norvegicus ENSRNOG00000006978 N
MTERF2 Pan troglodytes ENSPTRG00000005395 N
MTERF2 Procavia capensis ENSPCAG00000008234 N
MTERF2 Ochotona princeps ENSOPRG00000008669 N
Mterf2 Mus musculus ENSMUSG00000049038 N
MTERF2 Monodelphis domestica ENSMODG00000001589 N
MTERF2 Gorilla gorilla ENSGGOG00000025492 N
MTERF2 Homo sapiens ENSG00000120832 N
Mterf2 Dipodomys ordii ENSDORG00000004167 N
MTERF2 Bos taurus ENSBTAG00000010144 N
Myotis_brandtii_Cry1_10020414 Myotis brandtii Myotis_brandtii_Cry1_10020414 N