CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_fgenesh1_pg.C_90227
(
Micromonas pusilla
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
estExt_fgenesh1_pg.C_90227
T334001_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_90227
Sox
19
94
PKRARTAYLVFCDKHRAQIMRDVHPEPDAKFTREEMQQVTTRLAERWKNVAPDELAACKAEADRLKDEYEAAKVAF
estExt_fgenesh1_pg.C_90227
Sox
122
198
PKRARTAYLIFCDRYRNLIMKEVHSDPTTKFTREEMQQVTTRLADMWKNVHTEVLAECKAEAEECKRVYQEQKDKYV
estExt_fgenesh1_pg.C_90227
Sox
222
290
PKRPRTAYLIFAEDERARLKKLHPDMDFTDTSRWVSREWKELPDNKRNAYMRTAEKEQDKHRMAKASWE
Links
Other
Sox
family TFs
Other
Micromonas pusilla
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29908.m006148
Ricinus communis
29908.m006148
N
Ciclev10002696m.g
Citrus clementina
Ciclev10002696m.g
N
Cla000688
Citrullus lanatus
Cla000688
N
evm.TU.supercontig_36.17
Carica papaya
evm.TU.supercontig_36.17
N
gene11124-v1.0-hybrid
Fragaria vesca
gene11124-v1.0-hybrid
N
Gorai.009G243500
Gossypium raimondii
Gorai.009G243500
N
orange1.1g030905m.g
Citrus sinensis
orange1.1g030905m.g
N
POPTR_0002s08740
Populus trichocarpa
POPTR_0002s08740
N
POPTR_0005s15990
Populus trichocarpa
POPTR_0005s15990
N
SapurV1A.0010s0820
Salix purpurea
SapurV1A.0010s0820
N
TCM_035057
Theobroma cacao
TCM_035057
N