CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
estExt_fgenesh2_pg.C_1350020
(
Branchiostoma floridae
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
estExt_fgenesh2_pg.C_1350020
T334013_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hmg20b
M02487_2.00
Mus musculus
NNATTATWHWN
NWDWATAATNN
PBM
Weirauch et al.(2014)
pTH8555
0.508
0.565
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_1350020
Sox
144
212
PKAPVTGYVLYLTEQREKLKVEHPELPFTEMTRLLGSRWSALSQEDKQKYLDAAEVDKRRYIEELKAYQ
Links
Other
Sox
family TFs
Other
Branchiostoma floridae
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh2_pg.C_4800003
Branchiostoma floridae
estExt_fgenesh2_pg.C_4800003
I
0.741
ENSLOCG00000010117
Lepisosteus oculatus
ENSLOCG00000010117
I
0.615
Sakowv30005216m.g
Saccoglossus kowalevskii
Sakowv30005216m.g
I
0.613
ENSLACG00000010699
Latimeria chalumnae
ENSLACG00000010699
I
0.584
LDEC010438
Leptinotarsa decemlineata
LDEC010438
I
0.566
SMAR000790
Strigamia maritima
SMAR000790
I
0.563
CGI_10028818
Crassostrea gigas
CGI_10028818
I
0.555
ENSOARG00000005838
Ovis aries
ENSOARG00000005838
I
0.551
NEMVEDRAFT_v1g87244
Nematostella vectensis
NEMVEDRAFT_v1g87244
I
0.546
TC011144
Tribolium castaneum
TC011144
N
0.544
ENSAMEG00000010946
Ailuropoda melanoleuca
ENSAMEG00000010946
I
0.541
ENSCPOG00000020879
Cavia porcellus
ENSCPOG00000020879
I
0.538
LotgiG231408
Lottia gigantea
LotgiG231408
I
0.530
YQE_10385
Dendroctonus ponderosae
YQE_10385
I
0.527
XP_002158984.1
Hydra magnipapillata
XP_002158984.1
I
0.524
XP_002161760.1
Hydra magnipapillata
XP_002161760.1
I
0.524
ENSLACG00000004599
Latimeria chalumnae
ENSLACG00000004599
I
0.518
ENSLOCG00000014255
Lepisosteus oculatus
ENSLOCG00000014255
I
0.518
hmg20a
Xenopus tropicalis
XB-GENE-955353
I
0.518
hmg20a.L
Xenopus laevis
XB-GENE-955359
I
0.518
hmg20a
Danio rerio
ENSDARG00000031198
I
0.511
ENSAMEG00000005678
Ailuropoda melanoleuca
ENSAMEG00000005678
I
0.508
ENSAMXG00000017986
Astyanax mexicanus
ENSAMXG00000017986
I
0.508
ENSAPLG00000005528
Anas platyrhynchos
ENSAPLG00000005528
I
0.508
ENSBTAG00000047668
Bos taurus
ENSBTAG00000047668
I
0.508
HMG20B
Canis familiaris
ENSCAFG00000019215
I
0.508
HMG20B
Callithrix jacchus
ENSCJAG00000003488
I
0.508
HMG20B
Cavia porcellus
ENSCPOG00000010777
I
0.508
ENSCSAG00000011140
Chlorocebus sabaeus
ENSCSAG00000011140
I
0.508
hmg20b
Danio rerio
ENSDARG00000042045
I
0.508
ENSFALG00000011609
Ficedula albicollis
ENSFALG00000011609
I
0.508
HMG20B
Felis catus
ENSFCAG00000026167
I
0.508
HMG20B
Homo sapiens
ENSG00000064961
I
0.508
HMG20B
Gallus gallus
ENSGALG00000027838
I
0.508
HMG20B
Gorilla gorilla
ENSGGOG00000014805
I
0.508
HMG20B
Loxodonta africana
ENSLAFG00000007845
I
0.508
ENSMEUG00000001270
Macropus eugenii
ENSMEUG00000001270
I
0.508
HMG20B
Meleagris gallopavo
ENSMGAG00000001362
I
0.508
HMG20B
Myotis lucifugus
ENSMLUG00000022392
I
0.508
HMG20B
Monodelphis domestica
ENSMODG00000006884
I
0.508
ENSMPUG00000003925
Mustela putorius furo
ENSMPUG00000003925
I
0.508
Hmg20b
Mus musculus
ENSMUSG00000020232
D
0.508
HMG20B
Ornithorhynchus anatinus
ENSOANG00000013515
I
0.508
ENSOARG00000012318
Ovis aries
ENSOARG00000012318
I
0.508
HMG20B
Otolemur garnettii
ENSOGAG00000014171
I
0.508
ENSPANG00000010575
Papio anubis
ENSPANG00000010575
I
0.508
HMG20B
Procavia capensis
ENSPCAG00000010772
I
0.508
ENSPPYG00000009378
Pongo abelii
ENSPPYG00000009378
I
0.508
ENSPSIG00000010923
Pelodiscus sinensis
ENSPSIG00000010923
I
0.508
Hmg20b
Rattus norvegicus
ENSRNOG00000020601
I
0.508
ENSSHAG00000007226
Sarcophilus harrisii
ENSSHAG00000007226
I
0.508
ENSSTOG00000022314
Ictidomys tridecemlineatus
ENSSTOG00000022314
I
0.508
HMG20B
Taeniopygia guttata
ENSTGUG00000000169
I
0.508
HMG20B
Tursiops truncatus
ENSTTRG00000008832
I
0.508
Aan_R011684
Calypte anna
Aan_R011684
I
0.508
Afo_R007636
Aptenodytes forsteri
Afo_R007636
I
0.508
Alligator_sinensis_CCG000441.1
Alligator sinensis
Alligator_sinensis_CCG000441.1
I
0.508
Cmyd_10002377
Chelonia mydas
Cmyd_10002377
I
0.508
Gfo_R007604
Geospiza fortis
Gfo_R007604
I
0.508
Myotis_brandtii_HMG20B_10016321
Myotis brandtii
Myotis_brandtii_HMG20B_10016321
I
0.508
Pvit_08123
Pogona vitticeps
Pvit_08123
I
0.508
hmg20b.S
Xenopus laevis
XB-GENE-17338323
I
0.508
hmg20b
Xenopus tropicalis
XB-GENE-5809048
I
0.508
hmg20b.L
Xenopus laevis
XB-GENE-5809135
I
0.508
hmg20b
Tetraodon nigroviridis
ENSTNIG00000010630
I
0.507
eef2l2
Takifugu rubripes
ENSTRUG00000017921
I
0.507
NEMVEDRAFT_v1g105457
Nematostella vectensis
NEMVEDRAFT_v1g105457
I
0.507
estExt_fgenesh2_pg.C_2300011
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300011
I
0.503
estExt_fgenesh2_pg.C_2300014
Branchiostoma floridae
estExt_fgenesh2_pg.C_2300014
I
0.503
ENSDORG00000012598
Dipodomys ordii
ENSDORG00000012598
I
0.501
ENSGMOG00000011717
Gadus morhua
ENSGMOG00000011717
I
0.501
hmg20b
Gasterosteus aculeatus
ENSGACG00000012785
I
0.500
ENSONIG00000004838
Oreochromis niloticus
ENSONIG00000004838
I
0.500
hmg20b
Oryzias latipes
ENSORLG00000004640
I
0.500
ENSPFOG00000003017
Poecilia formosa
ENSPFOG00000003017
I
0.500
ENSXMAG00000012647
Xiphophorus maculatus
ENSXMAG00000012647
I
0.500
ENSAMXG00000013048
Astyanax mexicanus
ENSAMXG00000013048
I
0.489
hmg20a
Gasterosteus aculeatus
ENSGACG00000003466
I
0.489
ENSONIG00000012862
Oreochromis niloticus
ENSONIG00000012862
I
0.489
hmg20a
Oryzias latipes
ENSORLG00000001794
I
0.489
ENSPFOG00000014087
Poecilia formosa
ENSPFOG00000014087
I
0.489
hmg20a
Tetraodon nigroviridis
ENSTNIG00000008460
I
0.489
hmg20a
Takifugu rubripes
ENSTRUG00000016127
I
0.489
ENSXMAG00000000587
Xiphophorus maculatus
ENSXMAG00000000587
I
0.489
ENSGMOG00000015452
Gadus morhua
ENSGMOG00000015452
I
0.485
Cmyd_10009674
Chelonia mydas
Cmyd_10009674
I
0.483
CapteG191691
Capitella teleta
CapteG191691
I
0.462
SPU_004776
Strongylocentrotus purpuratus
SPU_004776
I
0.462
SPU_018371
Strongylocentrotus purpuratus
SPU_018371
I
0.462
SMAR002604
Strigamia maritima
SMAR002604
I
0.458
Sakowv30033800m.g
Saccoglossus kowalevskii
Sakowv30033800m.g
I
0.447
HMG20A
Anolis carolinensis
ENSACAG00000011520
I
0.445
ENSAMEG00000008348
Ailuropoda melanoleuca
ENSAMEG00000008348
I
0.445
ENSAPLG00000015603
Anas platyrhynchos
ENSAPLG00000015603
I
0.445
HMG20A
Bos taurus
ENSBTAG00000020441
I
0.445
HMG20A
Canis familiaris
ENSCAFG00000018061
I
0.445
HMG20A
Choloepus hoffmanni
ENSCHOG00000012116
I
0.445
HMG20A
Callithrix jacchus
ENSCJAG00000011131
I
0.445
HMG20A
Cavia porcellus
ENSCPOG00000011704
I
0.445
ENSCSAG00000014734
Chlorocebus sabaeus
ENSCSAG00000014734
I
0.445
HMG20A
Dasypus novemcinctus
ENSDNOG00000034143
I
0.445
Hmg20a
Dipodomys ordii
ENSDORG00000000623
I
0.445
HMG20A
Erinaceus europaeus
ENSEEUG00000004472
I
0.445
HMG20A
Echinops telfairi
ENSETEG00000015812
I
0.445
ENSFALG00000010751
Ficedula albicollis
ENSFALG00000010751
I
0.445
HMG20A
Felis catus
ENSFCAG00000022539
I
0.445
HMG20A
Homo sapiens
ENSG00000140382
I
0.445
ENSGALG00000002746
Gallus gallus
ENSGALG00000002746
I
0.445
HMG20A
Gorilla gorilla
ENSGGOG00000008439
I
0.445
HMG20A
Loxodonta africana
ENSLAFG00000018273
I
0.445
ENSMEUG00000016429
Macropus eugenii
ENSMEUG00000016429
I
0.445
HMG20A
Meleagris gallopavo
ENSMGAG00000003179
I
0.445
HMG20A
Microcebus murinus
ENSMICG00000011025
I
0.445
HMG20A
Myotis lucifugus
ENSMLUG00000011648
I
0.445
HMG20A
Macaca mulatta
ENSMMUG00000007430
I
0.445
HMG20A
Monodelphis domestica
ENSMODG00000012113
I
0.445
ENSMPUG00000017330
Mustela putorius furo
ENSMPUG00000017330
I
0.445
Hmg20a
Mus musculus
ENSMUSG00000032329
I
0.445
ENSNLEG00000008357
Nomascus leucogenys
ENSNLEG00000008357
I
0.445
HMG20A
Ornithorhynchus anatinus
ENSOANG00000009993
I
0.445
ENSOARG00000001765
Ovis aries
ENSOARG00000001765
I
0.445
HMG20A
Oryctolagus cuniculus
ENSOCUG00000005648
I
0.445
HMG20A
Otolemur garnettii
ENSOGAG00000006630
I
0.445
ENSPANG00000015844
Papio anubis
ENSPANG00000015844
I
0.445
HMG20A
Procavia capensis
ENSPCAG00000013879
I
0.445
ENSPPYG00000006683
Pongo abelii
ENSPPYG00000006683
I
0.445
ENSPSIG00000013006
Pelodiscus sinensis
ENSPSIG00000013006
I
0.445
HMG20A
Pan troglodytes
ENSPTRG00000007326
I
0.445
Hmg20a
Rattus norvegicus
ENSRNOG00000016905
I
0.445
ENSSHAG00000012311
Sarcophilus harrisii
ENSSHAG00000012311
I
0.445
HMG20A
Sus scrofa
ENSSSCG00000001871
I
0.445
ENSSSCG00000024002
Sus scrofa
ENSSSCG00000024002
I
0.445
ENSSTOG00000013818
Ictidomys tridecemlineatus
ENSSTOG00000013818
I
0.445
HMG20A
Tupaia belangeri
ENSTBEG00000015283
I
0.445
HMG20A
Taeniopygia guttata
ENSTGUG00000003690
I
0.445
ENSTSYG00000003485
Tarsius syrichta
ENSTSYG00000003485
I
0.445
HMG20A
Tursiops truncatus
ENSTTRG00000006500
I
0.445
HMG20A
Vicugna pacos
ENSVPAG00000010013
I
0.445
TriadG23407
Trichoplax adhaerens
TriadG23407
I
0.445
Aan_R011791
Calypte anna
Aan_R011791
I
0.445
Afo_R007008
Aptenodytes forsteri
Afo_R007008
I
0.445
Alligator_sinensis_CCG010545.1
Alligator sinensis
Alligator_sinensis_CCG010545.1
I
0.445
Brh_R011859
Buceros rhinoceros
Brh_R011859
I
0.445
Cmyd_10010094
Chelonia mydas
Cmyd_10010094
I
0.445
ENSP00000336856-D1
Bos grunniens
ENSP00000336856-D1
I
0.445
ENSP00000371133
Macaca fascicularis
ENSP00000371133
I
0.445
Myotis_brandtii_HMG20A_10005450
Myotis brandtii
Myotis_brandtii_HMG20A_10005450
I
0.445
Pvit_01997
Pogona vitticeps
Pvit_01997
I
0.445
Tal_R006697
Tyto alba
Tal_R006697
I
0.445
AEPI008671
Anopheles epiroticus
AEPI008671
N
0.431
KGM_20768
Danaus plexippus
KGM_20768
N
0.418