fgeneshPB_pg.1__1053 (Phycomyces blakesleeanus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgeneshPB_pg.1__1053 T334209_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW

WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.458 0.385
ste11
M11343_2.00
Schizosaccharomyces pombe Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.458 0.385
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgeneshPB_pg.1__1053 Sox 1 65

Links

Other Sox family TFs
Other Phycomyces blakesleeanus TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
fgenesh1_pm.C_scaffold_6001805 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6001805 I
STOP2 Arabidopsis thaliana AT5G22890 D
Bostr.10199s0156 Boechera stricta Bostr.10199s0156 I
Bo2g024530 Brassica oleracea Bo2g024530 I
Bo2g024540 Brassica oleracea Bo2g024540 I
Bo9g148080 Brassica oleracea Bo9g148080 I
Bo9g148110 Brassica oleracea Bo9g148110 I
Bra002438 Brassica rapa Bra002438 I
Cagra.3954s0025 Capsella grandiflora Cagra.3954s0025 I
Carubv10002559m.g Capsella rubella Carubv10002559m.g I