CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgeneshPB_pg.1__1053
(
Phycomyces blakesleeanus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
fgeneshPB_pg.1__1053
T334209_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ste11
M11342_2.00
Schizosaccharomyces pombe
DWNTTTCTTTGTTHNHWW
WWDNDAACAAAGAAANWH
Transfac
Matys et al.(2006)
F$STE11_01
0.458
0.385
ste11
M11343_2.00
Schizosaccharomyces pombe
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$STE11_02
0.458
0.385
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshPB_pg.1__1053
Sox
1
65
MNCFLAYRLAKQKEVAAYCPGANHRDISKVIAKWWHNETQEEKKLYKRLAADAKHEHSLLYPDYK
Links
Other
Sox
family TFs
Other
Phycomyces blakesleeanus
TFs
148 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh1_pm.C_scaffold_6001805
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6001805
I
STOP2
Arabidopsis thaliana
AT5G22890
D
Bostr.10199s0156
Boechera stricta
Bostr.10199s0156
I
Bo2g024530
Brassica oleracea
Bo2g024530
I
Bo2g024540
Brassica oleracea
Bo2g024540
I
Bo9g148080
Brassica oleracea
Bo9g148080
I
Bo9g148110
Brassica oleracea
Bo9g148110
I
Bra002438
Brassica rapa
Bra002438
I
Cagra.3954s0025
Capsella grandiflora
Cagra.3954s0025
I
Carubv10002559m.g
Capsella rubella
Carubv10002559m.g
I