CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.21.309.1
(
Fragilariopsis cylindrus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
gw1.21.309.1
T334243_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.21.309.1
Sox
5
65
PKRPLSAYNLFFKARREAIMLAAEGVGFANLARTIATEWKILDAQERVPYETIAAVDKERY
Links
Other
Sox
family TFs
Other
Fragilariopsis cylindrus
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gw1.30.62.1
Fragilariopsis cylindrus
gw1.30.62.1
N
0.498
Phatr3_J45662
Phaeodactylum tricornutum
Phatr3_J45662
I
0.444
Phatr3_J34626
Phaeodactylum tricornutum
Phatr3_J34626
N
0.439
Phatr3_J39880
Phaeodactylum tricornutum
Phatr3_J39880
N
0.439
M404DRAFT_63984
Pisolithus tinctorius
M404DRAFT_63984
I
0.426
TRIATDRAFT_321166
Trichoderma atroviride
TRIATDRAFT_321166
I
0.423
TRIVIDRAFT_228694
Trichoderma virens
TRIVIDRAFT_228694
I
0.423