gw1.30.62.1 (Fragilariopsis cylindrus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gw1.30.62.1 T334249_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.30.62.1 Sox 6 75

Links

Other Sox family TFs
Other Fragilariopsis cylindrus TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.21.309.1 Fragilariopsis cylindrus gw1.21.309.1 N 0.498
TVAG_453060 Trichomonas vaginalis TVAG_453060 N 0.477
A1O1_01197 Capronia coronata A1O1_01197 I 0.469
A1O3_08778 Capronia epimyces A1O3_08778 I 0.469
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.469
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.469
PV06_04154 Exophiala oligosperma PV06_04154 I 0.469
PV08_04655 Exophiala spinifera PV08_04655 I 0.469
PV11_09703 Exophiala sideris PV11_09703 I 0.469
fgenesh1_pg.18_#_36 Coccomyxa subellipsoidea C169 fgenesh1_pg.18_#_36 N 0.463
fgeneshCV_pg.C_scaffold_18000199 Chlorella vulgaris fgeneshCV_pg.C_scaffold_18000199 N 0.463
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.462
G647_10093 Cladophialophora carrionii G647_10093 I 0.462
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.462
M7I_1578 Glarea lozoyensis M7I_1578 I 0.455
MBM_02410 Marssonina brunnea MBM_02410 I 0.455
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.455
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.455
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.455
PV10_01993 Exophiala mesophila PV10_01993 I 0.442
Z517_02317 Fonsecaea pedrosoi Z517_02317 I 0.442
Phatr3_J45662 Phaeodactylum tricornutum Phatr3_J45662 I 0.441
A1O9_00742 Exophiala aquamarina A1O9_00742 I 0.437
A1O5_06047 Cladophialophora psammophila A1O5_06047 I 0.435
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.435
PV04_00198 Capronia semiimmersa PV04_00198 I 0.435
PV07_09313 Cladophialophora immunda PV07_09313 I 0.435
Z519_04692 Cladophialophora bantiana Z519_04692 I 0.435
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.432
EV44_g2383 Erysiphe necator EV44_g2383 I 0.428
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.423
gw1.17.00.287.1 Ostreococcus tauri gw1.17.00.287.1 N 0.423
estExt_fgeneshPB_pg.C_360007 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_360007 I 0.422
BGHDH14_bgh04339 Blumeria graminis BGHDH14_bgh04339 I 0.418
EMIHUDRAFT_434306 Emiliania huxleyi EMIHUDRAFT_434306 N 0.417
Phatr3_J34626 Phaeodactylum tricornutum Phatr3_J34626 N 0.416
Phatr3_J39880 Phaeodactylum tricornutum Phatr3_J39880 N 0.416
PICST_23779 Scheffersomyces stipitis PICST_23779 I 0.416
gww1.1.1.1342.1 Pichia stipitis gww1.1.1.1342.1 I 0.416