CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22006454m.g
(
Octopus bimaculoides
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Ocbimv22006454m.g
T334309_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22006454m.p
Sox
574
640
PKRPLSAYFIWLSENREKIKADNPGISITDLTKKAADVWRNLTDKSKWEKLQEESKEKYNQLMEEYK
Links
Other
Sox
family TFs
Other
Octopus bimaculoides
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HNAJ_0000793101
Hymenolepis nana
HNAJ_0000793101
I
0.531
BGLB002303
Biomphalaria glabrata
BGLB002303
N
0.511
LotgiG207546
Lottia gigantea
LotgiG207546
N
0.495
ISCW020032
Ixodes scapularis
ISCW020032
N
0.487
CGI_10024258
Crassostrea gigas
CGI_10024258
N
0.485
ssrp1a
Danio rerio
ENSDARG00000037397
I
0.484
ENSCSAVG00000011755
Ciona savignyi
ENSCSAVG00000011755
N
0.467
ENSAMXG00000014826
Astyanax mexicanus
ENSAMXG00000014826
N
0.459
TTHERM_00257230
Tetrahymena thermophila
TTHERM_00257230
N
0.455
tetur01g10640
Tetranychus urticae
tetur01g10640
N
0.453
ALUE_0000448701
Ascaris lumbricoides
ALUE_0000448701
N
0.449
ASU_05752
Ascaris suum
ASU_05752
N
0.449
Hba_18326
Heterorhabditis bacteriophora
Hba_18326
I
0.446
ALUE_0000605501
Ascaris lumbricoides
ALUE_0000605501
N
0.443
ASU_07820
Ascaris suum
ASU_07820
N
0.443
SPU_023988
Strongylocentrotus purpuratus
SPU_023988
N
0.442
CLEC003860
Cimex lectularius
CLEC003860
I
0.439
HmN_000028000
Hymenolepis microstoma
HmN_000028000
N
0.439
SMAR015352
Strigamia maritima
SMAR015352
N
0.438
CapteG172235
Capitella teleta
CapteG172235
I
0.434
Minc03634
Meloidogyne incognita
Minc03634
N
0.430
Minc04648
Meloidogyne incognita
Minc04648
N
0.430
maker-nMf.1.1.scaf04887-augustus-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf04887-augustus-gene-0.6
N
0.430
MhA1_Contig400.frz3.gene18
Meloidogyne hapla
MhA1_Contig400.frz3.gene18
N
0.430
NEMVEDRAFT_v1g59568
Nematostella vectensis
NEMVEDRAFT_v1g59568
N
0.429
ENSCING00000000505
Ciona intestinalis
ENSCING00000000505
I
0.421
ASIM_0000156001
Anisakis simplex
ASIM_0000156001
N
0.421
RPRC006380
Rhodnius prolixus
RPRC006380
I
0.419
EV44_g2383
Erysiphe necator
EV44_g2383
I
0.417
RSKR_0000269500
Rhabditophanes kr3021
RSKR_0000269500
N
0.415