CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10001858m.g
(
Capsella rubella
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Carubv10001858m.g
T334414_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMG-1
M02720_2.00
Pisum sativum
STYGTDHTY
RADHACRAS
SELEX
Mathelier et al.(2014)
MA0044.1
0.422
0.522
For this family, TFs with SR scores >
0.415
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10001858m
Sox
117
185
PKRPLTAFFIFMNDFRKTYKDENPSSNVKDVAKHGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLENND
Links
Other
Sox
family TFs
Other
Capsella rubella
TFs
91 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL011425
Aedes aegypti
AAEL011425
I
0.467
AMAG_02260
Allomyces macrogynus
AMAG_02260
N
0.495
AMAG_00757
Allomyces macrogynus
AMAG_00757
N
0.495
AMTR_s00046p00227790
Amborella trichopoda
AMTR_s00046p00227790
N
0.419
AMTR_s00171p00070550
Amborella trichopoda
AMTR_s00171p00070550
I
0.539
Aquca_035_00040
Aquilegia coerulea
Aquca_035_00040
I
0.419
scaffold_602413.1
Arabidopsis lyrata
scaffold_602413.1
N
0.594
fgenesh2_kg.6__1935__AT5G23420.1
Arabidopsis lyrata
fgenesh2_kg.6__1935__AT5G23420.1
N
0.488
HMGB7
Arabidopsis thaliana
AT5G23420
N
0.594
Bostr.10199s0131
Boechera stricta
Bostr.10199s0131
N
0.714
BGIBMGA005288
Bombyx mori
BGIBMGA005288
N
0.422
Bo2g160920
Brassica oleracea
Bo2g160920
I
0.625
Bo9g014140
Brassica oleracea
Bo9g014140
I
0.730
Bra009681
Brassica rapa
Bra009681
N
0.486
Bra026498
Brassica rapa
Bra026498
I
0.731
Bra029371
Brassica rapa
Bra029371
I
0.625
Cflo_11824--XP_001120264.1_APIME
Camponotus floridanus
Cflo_11824--XP_001120264.1_APIME
N
0.462
PK03866.1
Cannabis sativa
PK03866.1
I
0.473
Cagra.0086s0060
Capsella grandiflora
Cagra.0086s0060
I
0.741
evm.TU.supercontig_247.1
Carica papaya
evm.TU.supercontig_247.1
N
0.483
evm.TU.supercontig_19.183
Carica papaya
evm.TU.supercontig_19.183
I
0.421
Ca_05351
Cicer arietinum
Ca_05351
I
0.482
Cla009222
Citrullus lanatus
Cla009222
I
0.630
Cla018386
Citrullus lanatus
Cla018386
I
0.429
Ciclev10016587m.g
Citrus clementina
Ciclev10016587m.g
N
0.552
orange1.1g026850m.g
Citrus sinensis
orange1.1g026850m.g
N
0.552
Cucsa.067200
Cucumis sativus
Cucsa.067200
I
0.440
Cucsa.300030
Cucumis sativus
Cucsa.300030
I
0.630
CpipJ_CPIJ020011
Culex pipiens
CpipJ_CPIJ020011
I
0.433
CpipJ_CPIJ002953
Culex pipiens
CpipJ_CPIJ002953
N
0.433
CPIJ002953
Culex quinquefasciatus
CPIJ002953
N
0.433
CPIJ020011
Culex quinquefasciatus
CPIJ020011
I
0.433
YQE_02071
Dendroctonus ponderosae
YQE_02071
N
0.457
GF12460
Drosophila ananassae
FBgn0089497
N
0.415
Ssrp
Drosophila melanogaster
FBgn0010278
N
0.415
GD25013
Drosophila simulans
FBgn0196325
N
0.415
Eucgr.J00336
Eucalyptus grandis
Eucgr.J00336
I
0.539
Eucgr.J02535
Eucalyptus grandis
Eucgr.J02535
I
0.415
Thhalv10004817m.g
Eutrema salsugineum
Thhalv10004817m.g
N
0.641
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.429
GLYMA10G43440
Glycine max
GLYMA10G43440
I
0.502
GLYMA20G23370
Glycine max
GLYMA20G23370
I
0.502
Gorai.008G147700
Gossypium raimondii
Gorai.008G147700
I
0.574
Hsal_00538--XP_001120264.1_APIME
Harpegnathos saltator
Hsal_00538--XP_001120264.1_APIME
N
0.428
HMEL015307
Heliconius melpomene
HMEL015307
N
0.422
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
0.422
Lus10041009.g
Linum usitatissimum
Lus10041009.g
N
0.474
Lus10035511.g
Linum usitatissimum
Lus10035511.g
I
0.452
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.474
LjT35D08.150.nd
Lotus japonicus
LjT35D08.150.nd
I
0.431
MDP0000205665
Malus domestica
MDP0000205665
I
0.592
cassava1392.valid.m1
Manihot esculenta
cassava1392.valid.m1
I
0.546
cassava23716.valid.m1
Manihot esculenta
cassava23716.valid.m1
I
0.444
MTR_7g068280
Medicago truncatula
MTR_7g068280
I
0.431
MTR_1g115220
Medicago truncatula
MTR_1g115220
I
0.466
mgf009124m
Mimulus guttatus
mgf009124m
N
0.545
GSMUA_AchrUn_randomG05290_001
Musa acuminata
GSMUA_AchrUn_randomG05290_001
I
0.508
SNAPOd2T00000181001
Oikopleura dioica
SNAPOd2T00000181001
N
0.470
OBART08G00070
Oryza barthii
OBART08G00070
I
0.510
OB08G10120
Oryza brachyantha
OB08G10120
N
0.491
OGLUM08G00090
Oryza glumaepatula
OGLUM08G00090
I
0.510
BGIOSGA027819
Oryza indica
BGIOSGA027819
I
0.510
BGIOSGA027814
Oryza indica
BGIOSGA027814
I
0.510
OLONG_014445
Oryza longistaminata
OLONG_014445
I
0.510
ONIVA08G00070
Oryza nivara
ONIVA08G00070
I
0.510
OPUNC08G00150
Oryza punctata
OPUNC08G00150
I
0.510
ORUFI08G00080
Oryza rufipogon
ORUFI08G00080
I
0.510
OS08G0101100
Oryza sativa
OS08G0101100
I
0.510
OSTLU_15773
Ostreococcus lucimarinus
OSTLU_15773
N
0.424
Pavir.J10680
Panicum virgatum
Pavir.J10680
N
0.428
PPAI002521
Phlebotomus papatasi
PPAI002521
N
0.420
PDK_20s1709771g002
Phoenix dactylifera
PDK_20s1709771g002
N
0.419
PDK_20s1355261g001
Phoenix dactylifera
PDK_20s1355261g001
N
0.498
gw1.106.59.1
Physcomitrella patens
gw1.106.59.1
I
0.453
estExt_fgenesh1_pm.C_880025
Physcomitrella patens
estExt_fgenesh1_pm.C_880025
I
0.462
gw1.106.60.1
Physcomitrella patens
gw1.106.60.1
I
0.453
HMG-1
Pisum sativum
Q41026_PEA
D
0.422
HMGB6
Populus trichocarpa
POPTR_0007s15320
I
0.562
Pm006054
Prunus mume
Pm006054
I
0.589
PRUPE_ppa026912mg
Prunus persica
PRUPE_ppa026912mg
I
0.589
30131.m007272
Ricinus communis
30131.m007272
I
0.556
29600.m000548
Ricinus communis
29600.m000548
I
0.418
SapurV1A.0766s0120
Salix purpurea
SapurV1A.0766s0120
I
0.600
Si014434m.g
Setaria italica
Si014434m.g
N
0.463
Solyc04g008820.2
Solanum lycopersicum
Solyc04g008820.2
I
0.502
PGSC0003DMG400025304
Solanum tuberosum
PGSC0003DMG400025304
I
0.550
Sb07g000230
Sorghum bicolor
Sb07g000230
N
0.430
TCM_007659
Theobroma cacao
TCM_007659
I
0.583
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
0.580
GRMZM2G125648
Zea mays
GRMZM2G125648
N
0.457
L798_13679
Zootermopsis nevadensis
L798_13679
N
0.431