CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G006100
(
Gossypium raimondii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Gorai.013G006100
T334554_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G006100.1
Sox
72
133
QPRSAFNIFWESFMEANKNGNLVDVDRKVFETWKNMSEEERKPYVTQAGKLNSAYMKDMTEA
Gorai.013G006100.2
Sox
72
133
QPRSAFNIFWESFMEANKNGNLVDVDRKVFETWKNMSEEERKPYVTQAGKLNSAYMKDMTEA
Links
Other
Sox
family TFs
Other
Gossypium raimondii
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_045441
Theobroma cacao
TCM_045441
N
0.573
Lus10000418.g
Linum usitatissimum
Lus10000418.g
N
0.482
evm.TU.supercontig_19.89
Carica papaya
evm.TU.supercontig_19.89
N
0.477
cassava14219.m1
Manihot esculenta
cassava14219.m1
N
0.445
29729.m002338
Ricinus communis
29729.m002338
N
0.443