Pavir.Fb00026 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Fb00026 T334670_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb00026.1.p Sox 92 156

Links

Other Sox family TFs
Other Panicum virgatum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.615
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.578
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.574
Si014434m.g Setaria italica Si014434m.g N 0.553
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.511
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.511
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.511
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.511
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.511
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.484
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.477
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.472
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.472
OBART08G00070 Oryza barthii OBART08G00070 I 0.472
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.472
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.472
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.472
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.472
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.472
OS08G0101100 Oryza sativa OS08G0101100 I 0.472
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.467
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.453
OB08G10120 Oryza brachyantha OB08G10120 N 0.453
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.451
Pm006054 Prunus mume Pm006054 I 0.451
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.441
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.441
MDP0000205665 Malus domestica MDP0000205665 I 0.440
PK03866.1 Cannabis sativa PK03866.1 I 0.438
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.434
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.434
AC186524.3_FG005 Zea mays AC186524.3_FG005 N 0.431
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.426
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.421
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.415