Pavir.Ib00755 (Panicum virgatum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Pavir.Ib00755 T334677_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.673 0.800
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.673 0.800
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.657 0.689
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.627 0.667
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.627 0.667
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.556 0.578
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib00755.1.p Sox 107 151

Links

Other Sox family TFs
Other Panicum virgatum TFs

501 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011267 Ailuropoda melanoleuca ENSAMEG00000011267 I
ENSBTAP00000024080-D1 Bos grunniens ENSBTAP00000024080-D1 I
ZNF449 Bos taurus ENSBTAG00000018090 I
ZNF449 Callithrix jacchus ENSCJAG00000014517 I
ZNF449 Canis familiaris ENSCAFG00000018905 I
ENSCPOG00000004042 Cavia porcellus ENSCPOG00000004042 I
ENSCSAG00000007689 Chlorocebus sabaeus ENSCSAG00000007689 I
Zfp449 Dipodomys ordii ENSDORG00000003522 I
ENSETEG00000009064 Echinops telfairi ENSETEG00000009064 I
ZNF449 Equus caballus ENSECAG00000003581 I
ENSEEUG00000003860 Erinaceus europaeus ENSEEUG00000003860 I
ENSFCAG00000024967 Felis catus ENSFCAG00000024967 I
ZNF449 Gorilla gorilla ENSGGOG00000000032 I
ZNF449 Homo sapiens ENSG00000173275 D
ENSSTOG00000024213 Ictidomys tridecemlineatus ENSSTOG00000024213 I
ENSLAFG00000017131 Loxodonta africana ENSLAFG00000017131 I
ZNF449 Macaca mulatta ENSMMUG00000008108 I
ZNF449 Microcebus murinus ENSMICG00000003164 I
ENSMPUG00000012654 Mustela putorius furo ENSMPUG00000012654 I
Zfp449 Mus musculus ENSMUSG00000073176 I
Myotis_brandtii_ZNF449_10001399 Myotis brandtii Myotis_brandtii_ZNF449_10001399 I
ENSNLEG00000002174 Nomascus leucogenys ENSNLEG00000002174 I
ZNF449 Oryctolagus cuniculus ENSOCUG00000014649 I
ZNF449 Otolemur garnettii ENSOGAG00000003684 I
ENSOARG00000011892 Ovis aries ENSOARG00000011892 I
ZNF449 Pan troglodytes ENSPTRG00000022299 I
ENSPANG00000012789 Papio anubis ENSPANG00000012789 I
ENSPPYG00000020749 Pongo abelii ENSPPYG00000020749 I
ZNF449 Pteropus vampyrus ENSPVAG00000006757 I
Zfp449 Rattus norvegicus ENSRNOG00000050562 I
ZNF449 Sus scrofa ENSSSCG00000012691 I
ZNF449 Tursiops truncatus ENSTTRG00000010555 I
ZNF449 Vicugna pacos ENSVPAG00000002342 I